View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20340_high_30 (Length: 255)
Name: NF20340_high_30
Description: NF20340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20340_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 8048670 - 8048916
Alignment:
| Q |
1 |
aattgatgaagaacgaagccgccaaggcgacactcgaaggatttgtgaaattacttaaga---agaagaagatggaattttatgtttgagaataataata |
97 |
Q |
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| T |
8048670 |
aattgatgaagaacgaagccgccaaggcgacactcgaaggatttgtgaaattacttaagaagaagaagaagatggaatttgatgtttgagaataataata |
8048769 |
T |
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| Q |
98 |
acaataaaattgaaccttctcaacagcaccaatctagaaaatgtaaggttagttgcatg---------gtgggaactgggaatagcaagagcaatattgg |
188 |
Q |
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| T |
8048770 |
acaataaaattgaaccttctcaacagcaccaatctagaaaatgtaaggttagttgcaagcacaaatgagttgg---tgggaatagcaagagcaatattgg |
8048866 |
T |
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| Q |
189 |
tgttgctcaaagaaagactagaggaattaaaagaggatctagtttgtaat |
238 |
Q |
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| T |
8048867 |
tgttactcaaagaaagactagaggaattaaaagaggatctagtttgtaat |
8048916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 8046544 - 8046617
Alignment:
| Q |
165 |
tgggaatagcaagagcaatattggtgttgctcaaagaaagactagaggaattaaaagaggatctagtttgtaat |
238 |
Q |
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| T |
8046544 |
tgggaatagcaagagcaatgttgttgttactcaaagaaggacaagaggttataaaagaggttctagtttgtaat |
8046617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 8046384 - 8046494
Alignment:
| Q |
1 |
aattgatgaagaacgaagccgccaaggcgacactcgaaggatttgtgaaattacttaagaagaagaagatggaattttatgtttgagaataataataaca |
100 |
Q |
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| T |
8046384 |
aattgatgaagaacgaagacgcggaggcgacgctggaaggatttgtgaagttgttgaagaggaagaaaatggaaggtgatgtgtgtg-agaataataaca |
8046482 |
T |
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| Q |
101 |
ataaaattgaac |
112 |
Q |
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| T |
8046483 |
ataaaatagaac |
8046494 |
T |
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