View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20340_high_34 (Length: 235)
Name: NF20340_high_34
Description: NF20340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20340_high_34 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 1025389 - 1025566
Alignment:
| Q |
16 |
tgatctcaacatttacaacaaccatatccatgttatgctgaatatcttactnnnnnnnnngttatgctgaatatcaaccagaaaaatagtgttgctgttt |
115 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1025389 |
tgatgtcaacatttacaacaaccatatccaagttattctgaatatcttactaaaaaaaaagttatgctgaatatcaaccagaaaaatagtgttgctgttt |
1025488 |
T |
|
| Q |
116 |
tattatgattttttgtcctcgaaatcataacataaagtatcgcaaaaacaatcagaattaaaaattcacctacatggt |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1025489 |
tattatgattttttgtcctcgaaatcataatataaagtatcgcaaaaataatcagaattaaaaattcacctacatggt |
1025566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University