View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20340_high_6 (Length: 456)

Name: NF20340_high_6
Description: NF20340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20340_high_6
NF20340_high_6
[»] chr5 (1 HSPs)
chr5 (9-456)||(10498888-10499332)


Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 9 - 456
Target Start/End: Original strand, 10498888 - 10499332
Alignment:
Q  9 agcagagaagcatagcaaatccacaggagtttgaatagtagccttcttacttctgtcaatcaaaccaatcagaagcagcatcactatcacatgaccaacc 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10498888 agcacagaagcatagcaaatccacaggagtttgaatagtagccttcttacttctgtcaatcaaaccaatcagaagcagcatcactatcacatgaccaacc 10498987  T
Q  109 ttggtttttaggtcatttactgtttttatatccaaccattttggtcgttcctgagaaggagaaacaatcgaattagcatcaaagataatttatcatcaag 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  10498988 ttggtttttaggtcatttactgtttttatatccaaccattttggtcgttcctgagacggagaaacaatggaattagcatcaaagataatttatcatcaag 10499087  T
Q  209 aattttctaatttcctaaggtagttgactaggaaaaagaatgtctaaaagctaaccttcaaagtgaatatgccaaatagatttgatctatcagaaggttt 308  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10499088 aattttctaatttcctaaggt---tgactaggaaaaagaatgtctaaaagctaaccttcaaagtgaatatgccaaatagatttgatctatcagaaggttt 10499184  T
Q  309 ttgatcttgcagagagcttgcactatcaagattactcacaaagagctcatacagacccattccaaagactagcatcaccgttcctaaaagatagagatct 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10499185 ttgatcttgcagagagcttgcactatcaagattactcacaaagagctcatacagacccattccaaagactagcatcaccgttcctaaaagatagagatct 10499284  T
Q  409 acatgaacaatgaagtagccgttagaaagaagagaatcacaaataaat 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10499285 acatgaacaatgaagtagccgttagaaagaagagaatcacaaataaat 10499332  T

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