View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20340_high_7 (Length: 447)
Name: NF20340_high_7
Description: NF20340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20340_high_7 |
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| [»] scaffold0072 (2 HSPs) |
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Alignment Details
Target: scaffold0072 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 275 - 439
Target Start/End: Original strand, 1365 - 1529
Alignment:
| Q |
275 |
gcttctattgtaacattttacttagcacaacttggttttggactaagtggttccatcaatggatttggtttcatgtaaatcttaattttcttttattctt |
374 |
Q |
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| T |
1365 |
gcttctattgtaacattttacttagcacaacttggttttggactaagtggttccatcaatggatttggtttcatgtaaatcttaattttcttttattctt |
1464 |
T |
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| Q |
375 |
caatagttatgacagtaagttctattgtgtcttcatacggttatgatgattatctttcctttgct |
439 |
Q |
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| T |
1465 |
caatagttatgacagtaagttctgttgtgtcttcatacggtgatgatgattatctttcctttgct |
1529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 1110 - 1301
Alignment:
| Q |
20 |
tgtcgaactcaaaggtggtgggttactatagtgtgatttcagattttggatatggtgctggggtgaacttccttaatacctctactgtgaatttcaagtc |
119 |
Q |
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| T |
1110 |
tgtcgaactcaaaggtggtgggtttctatggtgtgatctcaaattttggatatggtgctggggtgaatttccttaatatttctagtgtgaatttcaagtc |
1209 |
T |
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| Q |
120 |
tttgttaattttgagagtgcttaggnnnnnnnnnnggtgggtgctaaggtttgtttgcctgatagtaccaattgatatttgatttgtaggag |
211 |
Q |
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| T |
1210 |
tttgttaattttgagagtgcttaggttttttttttggtgggtgctaaggtttgtttgcctgatagtaccaattgatatttgatttgtaggag |
1301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 325 - 390
Target Start/End: Complemental strand, 20646729 - 20646664
Alignment:
| Q |
325 |
ttccatcaatggatttggtttcatgtaaatcttaattttcttttattcttcaatagttatgacagt |
390 |
Q |
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| T |
20646729 |
ttccatcaatggatttggtttcatataaatcttaattttatgttattcttgaatagttatgacagt |
20646664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 325 - 390
Target Start/End: Original strand, 111137 - 111202
Alignment:
| Q |
325 |
ttccatcaatggatttggtttcatgtaaatcttaattttcttttattcttcaatagttatgacagt |
390 |
Q |
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| T |
111137 |
ttccatcaatggatttggtttcatataaatcttaattttatgttattcttgaatagttatgacagt |
111202 |
T |
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