View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20340_high_9 (Length: 414)
Name: NF20340_high_9
Description: NF20340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20340_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 84 - 395
Target Start/End: Complemental strand, 5171217 - 5170902
Alignment:
| Q |
84 |
gtttgacgcttggtggaggggatgaaacttgatagaccacagggtccgatgcatcctacataattcaggtaaatgcacacaaatacaatacttaaatatt |
183 |
Q |
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| T |
5171217 |
gtttgacgcttggtggaggggatgaaacttgatagactacagggtccgatgcatcctacataattcaggtaaatgcacacaaatacaatacttaaatatt |
5171118 |
T |
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| Q |
184 |
cagaatgaatgaacgaatcaagtagttaattcatactcaccatagttaactgaaagatgaat----atagtgatgtcaaaatatttttagatttgatgtt |
279 |
Q |
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| T |
5171117 |
cagaatgaatgaacgaatcaagtagttaattcatactcaccatagttaactgaaagatgaatagagatagtgatgtaaaaatatttttagatttgatgtt |
5171018 |
T |
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| Q |
280 |
ttggagaaatccacccaagctacaaatttcctgataatcaaggtggatctgaacatcgacttctagttgactagaacttcttaaaaaggatattataggt |
379 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5171017 |
ttggagaaatccacccaagctacaaatttcaagataatcaaggtggatctgaacatcgacttctagttgactagaacttcttaaaaaggatattataggt |
5170918 |
T |
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| Q |
380 |
tttgaaacacccctac |
395 |
Q |
| |
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|||||||||||||||| |
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| T |
5170917 |
tttgaaacacccctac |
5170902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 20 - 378
Target Start/End: Complemental strand, 5204636 - 5204269
Alignment:
| Q |
20 |
agtaagatatttacagcagacgaaaacaaagtttccttttttggaaaggaacaaaggtgcaagtgtttgacgcttggtggaggggatgaaacttgataga |
119 |
Q |
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|||| |||||||||| |||||||||||||| |||| |||||||||| || | ||||||||||||||||| ||||||||| ||||||||||||||| ||| |
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| T |
5204636 |
agtatgatatttacaacagacgaaaacaaaatttcattttttggaacagagcgaaggtgcaagtgtttgatgcttggtggcggggatgaaacttgaaaga |
5204537 |
T |
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| Q |
120 |
ccacagggtccgatgcatcctacataattc-aggtaaatgcacacaaatacaatacttaaatatt---cagaatgaatgaacgaa-tcaagtagttaatt |
214 |
Q |
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||| |||| | ||||||||||||||| | | |||| | ||||||||||||||| |||||||| ||| |||||| ||||| | |||||| ||||| |
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| T |
5204536 |
ccaatgggttcagtgcatcctacataatccaaagtaagtacacacaaatacaataaataaatattatgtagattgaatggacgaattaaagtagctaatt |
5204437 |
T |
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| Q |
215 |
catactcaccatagttaactgaaagatgaat----atagtgatgtcaaaatatttttagatttgatgttttggagaaatccacccaagctacaaatttcc |
310 |
Q |
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|||||||||| |||| ||||||||||||| |||| |||| ||||| ||||| || |||||||||||| ||| || | | |||| |||||| ||| |
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| T |
5204436 |
catactcacctcagttggctgaaagatgaatagagatagagatgacaaaacattttgaggtttgatgttttgaagagattccctcaagttacaaagatcc |
5204337 |
T |
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| Q |
311 |
tgataatcaaggtggatctgaacatcgacttctagttgactagaacttcttaaaaaggatattatagg |
378 |
Q |
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| T |
5204336 |
agataatcaatggggatttgcaaatcgacttctagttgactagaacttctaagaaaagatataatagg |
5204269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 6231058 - 6230963
Alignment:
| Q |
20 |
agtaagatatttacagcagacgaaaacaaagtttccttttttggaaaggaacaaaggtgcaagtgtttgacgcttggtggaggggatgaaacttga |
115 |
Q |
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||||||||||||||| ||| ||||| |||||||| |||||||||| || | ||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
6231058 |
agtaagatatttacaatagatgaaaaaaaagtttcattttttggaacagagcgaaggtgcaagtgtttgatgcttggtggaggggatgacacttga |
6230963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 5171255 - 5171218
Alignment:
| Q |
17 |
gagagtaagatatttacagcagacgaaaacaaagtttc |
54 |
Q |
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| T |
5171255 |
gagagtaagatatttacagcagatgaaaacaaagtttc |
5171218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 5194364 - 5194269
Alignment:
| Q |
20 |
agtaagatatttacagcagacgaaaacaaagtttccttttttggaaaggaacaaaggtgcaagtgtttgacgcttggtggaggggatgaaacttga |
115 |
Q |
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||||||||||||||| ||| |||||| |||||| ||| |||||| | ||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
5194364 |
agtaagatatttacaatagatgaaaacgtagtttcatttgttggaacatagagaaggtgcaagtgtttgatacttggtggaggggatgacacttga |
5194269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 378
Target Start/End: Complemental strand, 5175161 - 5175120
Alignment:
| Q |
337 |
gacttctagttgactagaacttcttaaaaaggatattatagg |
378 |
Q |
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||||| |||||||||||||||||||| ||||||||| ||||| |
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| T |
5175161 |
gacttttagttgactagaacttcttagaaaggatataatagg |
5175120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 37 - 289
Target Start/End: Complemental strand, 8306415 - 8306158
Alignment:
| Q |
37 |
agacgaaaacaaagtttccttttttggaaaggaacaaaggtgcaagtgtttgacgcttggtggaggggatgaaacttgatagaccacagggtccgatgca |
136 |
Q |
| |
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||||||| |||||||| | ||||||||||| || || ||||| ||||||| ||||||||||||||||||||||||| | ||| ||||| || || |
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| T |
8306415 |
agacgaatacaaagttacattttttggaaaagagtgtagatgcaaatgtttgatgcttggtggaggggatgaaacttgaaataccgtagggttgaattca |
8306316 |
T |
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| Q |
137 |
tcctacataattca-ggtaaatgcacacaaatacaatacttaaatattcagaatgaatgaacgaatcaagtagttaattcatactcaccatagttaactg |
235 |
Q |
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| T |
8306315 |
tcctacacaatacagggtaagtacacacacattcaatatgtaaatatgcaaattgaatgaatgaaataagtagctaattcaaactcacctctgttagctc |
8306216 |
T |
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| Q |
236 |
aaagatgaat----atagtgatgtcaaaatatttttagatttgatgttttggagaaat |
289 |
Q |
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||| |||||| |||||||||| |||| |||| || ||||||||||||||||||| |
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| T |
8306215 |
aaatatgaatagcgatagtgatgttaaaacatttccaggtttgatgttttggagaaat |
8306158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 380
Target Start/End: Original strand, 8552399 - 8552573
Alignment:
| Q |
210 |
taattcatactcaccatagttaactgaaagatgaata----tagtgatgtcaaaatatttttagatttgatgttttggagaaatccacccaagctacaaa |
305 |
Q |
| |
|
||||||||||||||| |||| || ||||||||||| |||||||||||||| ||||| || ||||||||||||||||||| | |||| ||| || |
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| T |
8552399 |
taattcatactcacctccgttagctcaaagatgaatagagatagtgatgtcaaaacattttcaggtttgatgttttggagaaattccttcaagttaccaa |
8552498 |
T |
|
| Q |
306 |
tttcctgataatcaaggtggatctgaacatcgacttctagttgactagaacttcttaaaaaggatattataggtt |
380 |
Q |
| |
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||| |||||||| || ||| |||||||| |||| |||| |||||||||||||| ||| || || ||||||| |
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| T |
8552499 |
gatccaaataatcaatgtagatttgaacatcaactttcagtttactagaacttcttacaaaagaaataataggtt |
8552573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 8552200 - 8552295
Alignment:
| Q |
20 |
agtaagatatttacagcagacgaaaacaaagtttccttttttggaaaggaacaaaggtgcaagtgtttgacgcttggtggaggggatgaaacttga |
115 |
Q |
| |
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||||||||| ||| | ||||||| |||||||||| |||||||| || | || ||||||||||||||||||||||||||||||||||||||| |
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| T |
8552200 |
agtaagatacttagaagagacgaatacaaagtttctttttttgggaaagtgtgtagatgcaagtgtttgacgcttggtggaggggatgaaacttga |
8552295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 77 - 120
Target Start/End: Complemental strand, 49611467 - 49611424
Alignment:
| Q |
77 |
tgcaagtgtttgacgcttggtggaggggatgaaacttgatagac |
120 |
Q |
| |
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||||||||||| | ||||||||||||||||||||||||| |||| |
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| T |
49611467 |
tgcaagtgtttaatgcttggtggaggggatgaaacttgaaagac |
49611424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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