View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20340_low_1 (Length: 636)
Name: NF20340_low_1
Description: NF20340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20340_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 562; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 1 - 627
Target Start/End: Original strand, 39217052 - 39217690
Alignment:
| Q |
1 |
tttagtagatttagaagttctcatgtgaagagtggtgatattttaggataatagtgagttgctgataaagaattggtgggatgtgggacggatgagaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39217052 |
tttagtagatttagaagttctcatgtgaagggtggtgatattttaggataatagtgagttgctgataaagaattggtgggatgtgggacgggtgagaaaa |
39217151 |
T |
|
| Q |
101 |
agtgtggcaacttgaaggtgaatcagcaggatacacgtcacaacacaatcacagatccataatacacatcacaatagtacaca------------acaat |
188 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39217152 |
agtgtggcaacttgaaggtgaatcagcaggatacatgtcacaacacaatcacagatccataatacacatcacaatagtacacaacaacaatcacaacaat |
39217251 |
T |
|
| Q |
189 |
ttgaagatgaatcagcgagataaatagcataagttcatgccacagctccataatacacgttacaacaatcacaatgtctgcatttgcagtggctgcaacc |
288 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39217252 |
ttgaagatgaatcagcgagataaataggataagttcatgccacagctccataatacacgttacaacaatcacaatgtctgcatttgcagtggctgcaacc |
39217351 |
T |
|
| Q |
289 |
gcagtcacatctgtaattgcagcttctgtttgaaacaaaagcttagcttatttagcaaataggcttaagctatgttagaaaattcctaattcaagtcaat |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39217352 |
gcagtcacatctgtaattgcagcttctgtttgaaacaaaagcttagcttatttagcaaataggcttaagctatgttagaaaattcctaattcaagtcaat |
39217451 |
T |
|
| Q |
389 |
tgatacaggtccaagtgatagcatgaccatgaactattcctttccttgtgtaagaaaatgttagagaatctaaatttaagtgagtctatatggtttggat |
488 |
Q |
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|||||||| ||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39217452 |
tgatacagctccaagtgatagcttgaccatgaaccattcctttccttgtgtgagaaaatgttagagaatctaaatttaagtgagtctatatggtttggat |
39217551 |
T |
|
| Q |
489 |
tcagctaggatatactcattgtcaagttttgggttatgatatgtgtcaaatttgctattgtgaatatctgctagttacttgtcctaatatttcagctagc |
588 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39217552 |
tcagctaggatatattcattgtcaagttttgggttatgatatgtgtcaaatttgctattgtgaatatctgctagttacttgtcctaatatttcagctagc |
39217651 |
T |
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| Q |
589 |
atatacttttggtcctaatatccttcatcctagtataat |
627 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
39217652 |
atatacttttggtcctaatatccttcatcctagtataat |
39217690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 274 - 558
Target Start/End: Original strand, 39195715 - 39196008
Alignment:
| Q |
274 |
gcagtggctgcaaccgcagtcacatctgtaattgcagcttctgtttgaaacaaaag-cttagcttatttagc------aaataggcttaagctatgttag |
366 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| | |||||||||||| |||||||||||| ||| ||||| |
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| T |
39195715 |
gcagtggctgcaaccacagtcacatctgtaattgcagcttctatttgaaacaaaaggcctagcttatttaggcaaattaaataggcttaaactaggttag |
39195814 |
T |
|
| Q |
367 |
aaaattcctaattcaagtcaattgatacaggtccaagtgatagcatgaccatgaact--attcctttccttgtgtaagaaaatgttagagaatctaaatt |
464 |
Q |
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|||| || ||||||||||||| | |||||| ||||||||| ||||||||||||||| |||||||||||||||| ||| ||||||||| ||||||||| |
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| T |
39195815 |
aaaagtcttaattcaagtcaagtcatacagtcccaagtgattgcatgaccatgaactgtattcctttccttgtgtgagagaatgttagaaaatctaaatg |
39195914 |
T |
|
| Q |
465 |
taagtgagtctatatggtttggattcagctaggatatactcattgtcaagttttgggttatgatatgtgtcaaatttgctattgtgaatatctg |
558 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| |||| |
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| T |
39195915 |
taagtgagtctatatggtttggattcagctaggatatactcattgtcaagttttgggttatgatatgtgtcaaatttacgactgtgaatttctg |
39196008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 39195496 - 39195619
Alignment:
| Q |
1 |
tttagtagatttagaagttctcatgtgaagagtggtgatattttaggataatagtgagttgctgataaagaattggtgggatgtgggacggatgagaaaa |
100 |
Q |
| |
|
||||||||||| ||||||||||||| |||| | |||||||||||| ||||||||||||||| |||||||||| ||||||||||||| || |||| || |
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| T |
39195496 |
tttagtagattcagaagttctcatgcgaagggcggtgatattttaagataatagtgagttggaaataaagaatttgtgggatgtgggaggggtgagcaat |
39195595 |
T |
|
| Q |
101 |
agtgtggcaacttgaaggtgaatc |
124 |
Q |
| |
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||||||| | ||||||||||||| |
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| T |
39195596 |
agtgtggttatttgaaggtgaatc |
39195619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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