View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20340_low_10 (Length: 412)
Name: NF20340_low_10
Description: NF20340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20340_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 11 - 388
Target Start/End: Complemental strand, 3456461 - 3456084
Alignment:
| Q |
11 |
cacagattcttaagagagcagataatttcttacattttatacttcaaaatgcacctgttgttattggccatcaggtatattacagtgagtattgtgttta |
110 |
Q |
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| T |
3456461 |
cacagattcttaagagagcagataatttcttacattttatacttcaaaatgcacctgttgttattggccatcaggtatattacagtgagtattgtgttta |
3456362 |
T |
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| Q |
111 |
tttcttctttacctgacattacttgcaaaaaatcttggtgtatagcatgacatataattcaatacttccatgtcatgtgtaatagttaaattatatattt |
210 |
Q |
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| T |
3456361 |
tttcttctttacctgatattacttgcaaaaaaacttggtgtatggcttgtcatataattcaaaacttccatgttatgtgtaatggttaaattatatatct |
3456262 |
T |
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| Q |
211 |
tctattgaagttttagttgattcatcattttggatgcgaaatgtgtttttgcaaatgttatgaatttttcaatctaaaaggccgactcagtgtcgtaaac |
310 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||| | ||||||||||||||||| ||||| |
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| T |
3456261 |
tctatttaagttttagttgattcatcattttggatgctaaatttgtttttgcaaatgtaatgaatttttcaattttaaaggccgactcagtgttgtaaag |
3456162 |
T |
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| Q |
311 |
tggaccgtagtatttaaagatgagttgtaagttgaaaccctaagtagctactctgcagtgagagacgaaaggactatt |
388 |
Q |
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| T |
3456161 |
tggaccatagtatttaaacatgagttgtaatttgaaaacctaagtagctactctgcagtcagagacgaaaggactatt |
3456084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 3480848 - 3480741
Alignment:
| Q |
11 |
cacagattcttaagagagcagataatttcttacattttatacttcaaaatgcacctgttgttattggccatcaggtatattacagtgagtattgtgttta |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||| |||| |
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| T |
3480848 |
cacagattcttaagagagcagataatttcttacattttatacttcaaaatgcacctgttgttataggccatcaggtatactacaacgagtatttagtttc |
3480749 |
T |
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| Q |
111 |
tttcttct |
118 |
Q |
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|||||||| |
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| T |
3480748 |
tttcttct |
3480741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 48694357 - 48694426
Alignment:
| Q |
16 |
attcttaagagagcagataatttcttacattttatacttcaaaatgcacctgttgttattggccatcagg |
85 |
Q |
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||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
48694357 |
attctgaagagagcagataatttcttgcattttatactccaaaatgctcctgttgttattggccatcagg |
48694426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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