View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20340_low_11 (Length: 411)
Name: NF20340_low_11
Description: NF20340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20340_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 15 - 403
Target Start/End: Original strand, 12448176 - 12448568
Alignment:
| Q |
15 |
acctttgacataaatttcatgctcaattgtgcattctgagtagccatttttcttgagaaattcatcaattctcatattccagattcttcgtgattgcttt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
12448176 |
acctttgacataaatttcatgctcaattgtgcattctgagtagccatttttcttgagaaattcatcaactgtcatattccagattcttcgtgattgcttt |
12448275 |
T |
|
| Q |
115 |
aagccatataaagctttgttgatcttaagtactttatcttcttcacctttgactatgaagccctgtggttgatcaacatatacttcatccttaagtttga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12448276 |
aagccatataaagctttgttgatcttaagtactttatcttcttcacctttgactatgaagccctgtggttgatcaacatatacttcatccttaagtttga |
12448375 |
T |
|
| Q |
215 |
cattgagaaatgcagactttacatcaagaacttccttattttgatgtctccgaccattcataattgggtggtgtggct----tttcataagtcatagttc |
310 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12448376 |
cattgagaaatgcagactttacatcaagagcttccttattttgatgtctccgaccattcataattgggtggtgtggcttaactttcataagtcatagttc |
12448475 |
T |
|
| Q |
311 |
taataggtacttctgaataaaataaaatttgtatttaaacgaaagagtaactcaaataatcgttttatatttttctcttgggtttctctgtgc |
403 |
Q |
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||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12448476 |
taataggtacttctgaataaaataaaatttgtagttaagcgaaagagtaactcaaataatcgttttatatttttctcttgggtttctatgtgc |
12448568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 6362920 - 6362694
Alignment:
| Q |
14 |
cacctttgacataaatttcatgctcaattgtgcattctgagtagccatttttcttgagaaattcatcaattctcatattccagattcttcgtgattgctt |
113 |
Q |
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||||||||||||| ||| ||||||||| |||||||| |||||||||||||| ||||||||| ||||||||||| || | || |||| ||| |||||| |
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| T |
6362920 |
cacctttgacatagattccatgctcaactgtgcattatgagtagccattttccttgagaaactcatcaattctaattat--aggctcttggtgcttgctt |
6362823 |
T |
|
| Q |
114 |
taagccatataaagctttgttgatcttaagtactttatcttcttcacctttgactatgaagccctgtggttgatcaacatatacttcatccttaagtttg |
213 |
Q |
| |
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||||| ||||||| |||| || ||| | ||| |||||||||||| |||||||||||||||||||||||| ||||||||||||| |||| ||||||| |
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| T |
6362822 |
taagctatataaatctttattaggcttcaataccttatcttcttcatctttgactatgaagccctgtggttttccaacatatacttcctcctcaagtttg |
6362723 |
T |
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| Q |
214 |
acattgagaaatgcagactttacatcaag |
242 |
Q |
| |
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|| ||||||||||||||| |||||||| |
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| T |
6362722 |
caatcgagaaatgcagacttgacatcaag |
6362694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 36073484 - 36073660
Alignment:
| Q |
22 |
acataaatttcatgctcaattgtgcattctgagtagccatttttcttgagaaattcatcaattctcatattccagattcttcgtgattgctttaagccat |
121 |
Q |
| |
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||||| ||| ||||||||| |||||||| |||||||| ||||| ||||||||| |||| |||| ||||||||| |||| ||| |||||||||||||| |
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| T |
36073484 |
acatagattccatgctcaactgtgcattttgagtagctattttgcttgagaaaatcatatgttcttatattccaggctcttggtgcttgctttaagccat |
36073583 |
T |
|
| Q |
122 |
ataaagctttgttgatcttaagtactttatcttcttcacctttgactatgaagccctgtggttgatcaacatatact |
198 |
Q |
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| |||||||||| | || |||||||||||||||||||||| |||||| |||||||||||| ||||| |||||| |
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| T |
36073584 |
accaagctttgttcagtttcggtactttatcttcttcacctttaactatgtagccctgtggttattcaacttatact |
36073660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 55369686 - 55369774
Alignment:
| Q |
151 |
tcttcttcacctttgactatgaagccctgtggttgatcaacatatacttcatccttaagtttgacattgagaaatgcagactttacatc |
239 |
Q |
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|||||| ||||||| |||||||| |||| ||||| |||||||||||||||||||||||| || |||||||||| ||| |||| ||||| |
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| T |
55369686 |
tcttctccacctttaactatgaaaccctaaggttgttcaacatatacttcatccttaagtctgccattgagaaacgcaaacttgacatc |
55369774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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