View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20340_low_15 (Length: 356)
Name: NF20340_low_15
Description: NF20340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20340_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 343
Target Start/End: Original strand, 27140742 - 27141068
Alignment:
| Q |
17 |
aggaaagagtatgtgaaagaaatagaagacattgaaaggagtatgctgaaaagtttggcgaatctggtccatgatgaaaatttggatattcgagagttgt |
116 |
Q |
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| T |
27140742 |
aggaaagagtatgtgaaagaaatagaagatattggaaggagtatgctgaaaagtatggcaaatctgatccatgatgaaaatttggatattcgagagttgt |
27140841 |
T |
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| Q |
117 |
ttcatgatgattcgagagnnnnnnnaatgttataaaataaagtgtatgctgtacaaattaatgggtttatgtcaaaaattccaatatagtgacaaataat |
216 |
Q |
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| T |
27140842 |
ttcatgatgatttgagagtttttttaatgttataaaataa-gtgtatgctgtacaaattaatgggtttatgtcaaaaattccaatatagtgacaaataat |
27140940 |
T |
|
| Q |
217 |
acataatagtgtgagctaaataaaagaaaaagggtgtgattttcttcatcaccacactttt-nnnnnnntaaaatcatgcattgttttagaagtgtactt |
315 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27140941 |
acataatagtctgagctaaataaaagaaaaagggagtgattttcttcatcaccacacttttaaaaaaaataaaatcatgcattgttttagaagtgtactt |
27141040 |
T |
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| Q |
316 |
agaaaaaatattttgtttgaaaatatct |
343 |
Q |
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| T |
27141041 |
agaaaaaatattttgtttgaaaatatct |
27141068 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 16424076 - 16424113
Alignment:
| Q |
18 |
ggaaagagtatgtgaaagaaatagaagacattgaaagg |
55 |
Q |
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| T |
16424076 |
ggaaagagtaagtggaagaaatagaagacattgaaagg |
16424113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 4842015 - 4841975
Alignment:
| Q |
17 |
aggaaagagtatgtgaaagaaatagaagacattgaaaggag |
57 |
Q |
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| T |
4842015 |
aggaaagagtaagtgaaaaaaatagaagacgttgaaaggag |
4841975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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