View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20340_low_16 (Length: 355)
Name: NF20340_low_16
Description: NF20340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20340_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 8 - 340
Target Start/End: Original strand, 38312725 - 38313056
Alignment:
| Q |
8 |
acataatactaatgctgaaatgtattctaggtgttcgaactaatgttacaacaaaatgtcgaatctgatagcggggtagatcaaattgaatcagagttag |
107 |
Q |
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| T |
38312725 |
acataatactaatgctgaaatgtattctaggtgttcgaactaatgttacaacaaaatgtcgaatctgatagcggggtagatcaaattgaatcagagttag |
38312824 |
T |
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| Q |
108 |
tgcctatgtgtgctgctacaattctcgcacatgattttccctttgannnnnnnngagttggcgggaattaggaacctcgcatcttgcttaaatccaaatg |
207 |
Q |
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| T |
38312825 |
tgcctatgtgtgctgctacaattctcgcacatgattttccctttgattttttt-gagttggcgggaattaggaacctcgcatcttgcttaaatccaaatg |
38312923 |
T |
|
| Q |
208 |
ttgttatgcctccttcaaatgttcttgaggcttatgtctccgatttgtacacgaatgagaaactcaagcttaagcaagaattggctaccattcctaataa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38312924 |
ttgttatgcctccttcaaatgttcttgaggcttatgtctccgatttgtacacgaatcagaaactcaagcttaagcaagaattggctaccattcctaataa |
38313023 |
T |
|
| Q |
308 |
ataggatatctttaacttttgatttgtgggaat |
340 |
Q |
| |
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| T |
38313024 |
ataggatatctttaacttttgatttgtgggaat |
38313056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 194 - 340
Target Start/End: Original strand, 38305595 - 38305737
Alignment:
| Q |
194 |
cttaaatccaaatgttgttatgcctccttcaaatgttcttgaggcttatgtctccgatttgtacacgaatgagaaactcaagcttaagcaagaattggct |
293 |
Q |
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| T |
38305595 |
cttaaatccaaatattgttttgcctcctgtagatgttattgaggcttatgtctctgatttatacatgaaagagaaactgaagcttaaacaagaattggct |
38305694 |
T |
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| Q |
294 |
accattcctaataaataggatatctttaacttttgatttgtgggaat |
340 |
Q |
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| T |
38305695 |
accattcct----aataggatatctttaacttttgatttgtgggaat |
38305737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 194 - 340
Target Start/End: Original strand, 38316323 - 38316465
Alignment:
| Q |
194 |
cttaaatccaaatgttgttatgcctccttcaaatgttcttgaggcttatgtctccgatttgtacacgaatgagaaactcaagcttaagcaagaattggct |
293 |
Q |
| |
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|||||||||||||| |||||| ||||| |||||||| ||||||||||||| || ||||||||||||| |||||||| |||||||| |||||||||||| |
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| T |
38316323 |
cttaaatccaaatgctgttatacctccgacaaatgttattgaggcttatgtttcgcatttgtacacgaaagagaaactaaagcttaaacaagaattggct |
38316422 |
T |
|
| Q |
294 |
accattcctaataaataggatatctttaacttttgatttgtgggaat |
340 |
Q |
| |
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| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38316423 |
agcattcct----aataggatatctttaacttttgatttgtgggaat |
38316465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 194 - 340
Target Start/End: Original strand, 38320421 - 38320563
Alignment:
| Q |
194 |
cttaaatccaaatgttgttatgcctccttcaaatgttcttgaggcttatgtctccgatttgtacacgaatgagaaactcaagcttaagcaagaattggct |
293 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||| || ||||||||||||| |||||||||||||| | ||||||||||||||| || || |||||| |
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| T |
38320421 |
cttaaatccaaatgctgttatgcctcctataaatgttattaaggcttatgtctcggatttgtacacgaaagcgaaactcaagcttaaacaggatttggct |
38320520 |
T |
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| Q |
294 |
accattcctaataaataggatatctttaacttttgatttgtgggaat |
340 |
Q |
| |
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||||||||| |||||||||||||||||| ||||| ||||||||| |
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| T |
38320521 |
accattcct----aataggatatctttaactgttgatctgtgggaat |
38320563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 195 - 340
Target Start/End: Original strand, 38325169 - 38325310
Alignment:
| Q |
195 |
ttaaatccaaatgttgttatgcctccttcaaatgttcttgaggcttatgtctccgatttgtacacgaatgagaaactcaagcttaagcaagaattggcta |
294 |
Q |
| |
|
||||||| ||||| |||||| |||||| |||||||| |||||||||||||| | ||||||||| ||| |||||| |||||||| ||| ||||||||| |
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| T |
38325169 |
ttaaatcgaaatgctgttatacctcctacaaatgttattgaggcttatgtcactcatttgtacatgaaagagaaatctaagcttaaacaacaattggcta |
38325268 |
T |
|
| Q |
295 |
ccattcctaataaataggatatctttaacttttgatttgtgggaat |
340 |
Q |
| |
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|||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
38325269 |
ccattcct----aatagggtatctttaacttttgatttgtgggaat |
38325310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 340
Target Start/End: Original strand, 38299731 - 38299818
Alignment:
| Q |
249 |
gatttgtacacgaatgagaaactcaagcttaagcaagaattggctaccattcctaataaataggatatctttaacttttgatttgtgggaat |
340 |
Q |
| |
|
||||||||||| | ||||||||||| |||| ||| | ||||||| |||||||||| |||||||||||||||||||| ||||||||| |
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| T |
38299731 |
gatttgtacactgaagagaaactcaatattaaacaacagctggctactattcctaata----ggatatctttaacttttgatctgtgggaat |
38299818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 340
Target Start/End: Original strand, 38308385 - 38308470
Alignment:
| Q |
251 |
tttgtacacgaatgagaaactcaagcttaagcaagaattggctaccattcctaataaataggatatctttaacttttgatttgtgggaat |
340 |
Q |
| |
|
|||||||||| | ||||||| ||||| || ||| || |||||||||||||| |||| |||||||||||| ||||| |||||||||| |
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| T |
38308385 |
tttgtacacggaagagaaacataagctcaaacaacaactggctaccattccttataa----gatatctttaacctttgagttgtgggaat |
38308470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 340
Target Start/End: Complemental strand, 38851022 - 38850880
Alignment:
| Q |
194 |
cttaaatccaaatgttgttatgcctccttcaaatgttcttgaggcttatgtctccgatttgtacacgaatgagaaactcaagcttaagcaagaattggct |
293 |
Q |
| |
|
||||||||||||| || ||| |||||| ||||||| | || ||||| || || ||||||||||||| ||||||| |||||||| ||| |||| || |
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| T |
38851022 |
cttaaatccaaatattcctatacctcctagaaatgttatcgaagcttacgtttcacatttgtacacgaaagagaaacctaagcttaaacaacaattaact |
38850923 |
T |
|
| Q |
294 |
accattcctaataaataggatatctttaacttttgatttgtgggaat |
340 |
Q |
| |
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||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
38850922 |
accattcct----aataggatatctttatcttttgatttgtgggaat |
38850880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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