View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20340_low_17 (Length: 329)

Name: NF20340_low_17
Description: NF20340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20340_low_17
NF20340_low_17
[»] chr3 (3 HSPs)
chr3 (16-220)||(38140146-38140350)
chr3 (229-312)||(38141262-38141345)
chr3 (35-126)||(31814177-31814267)
[»] chr5 (1 HSPs)
chr5 (37-169)||(13312819-13312951)
[»] chr1 (3 HSPs)
chr1 (83-168)||(4713946-4714031)
chr1 (34-169)||(18833529-18833664)
chr1 (34-78)||(19382415-19382459)
[»] chr8 (2 HSPs)
chr8 (34-169)||(40209921-40210056)
chr8 (37-109)||(43093342-43093413)
[»] chr4 (1 HSPs)
chr4 (34-133)||(34941148-34941247)
[»] chr7 (1 HSPs)
chr7 (34-108)||(11454817-11454891)
[»] scaffold0044 (1 HSPs)
scaffold0044 (118-169)||(58352-58403)
[»] chr2 (1 HSPs)
chr2 (35-105)||(41825060-41825130)


Alignment Details
Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 38140146 - 38140350
Alignment:
Q  16 atataagaaatctatgaatgtgtttgtttcaagataagaaattacatttattggaatgatattctccggaataatatttttaggaataacattcttatct 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  38140146 atataagaaatctatgaatgtgtttgtttcaagataagaaattacatttattggaatgatattctccgaaataatatttttaggaataacattcctatct 38140245  T
Q  116 acgtgtttggtaagaattttgatttttcaggaatgctttagaaattatttaatttnnnnnnnnnnnntggaaacaaatttgagcggtagtgggaagttat 215  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||| |||||||||||||||||||||    
T  38140246 atgtgtttggtaagaattttgatttttcaggaatgctttagaaattatttaatttaaaaaataaaaatggaaacaaatgtgagcggtagtgggaagttat 38140345  T
Q  216 agcaa 220  Q
    |||||    
T  38140346 agcaa 38140350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 229 - 312
Target Start/End: Original strand, 38141262 - 38141345
Alignment:
Q  229 ttctattatttaaaaaaggaaacaaataaacttaaccgcaactgattgtagtaagaagaagagaataacacgttcaaaacacct 312  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38141262 ttctattatttaaaaaaggaaacgaataaacttaaccgcaactgattgtagtaagaagaagagaataacacgttcaaaacacct 38141345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 31814267 - 31814177
Alignment:
Q  35 gtgtttgtttcaagataagaaattacatttattggaatgatattctccggaataatatttttaggaataacattcttatctacgtgtttggt 126  Q
    |||||||||| ||| ||||||||||||||  ||  ||||||||| || ||||||||||||||||||| ||||||| ||||||  ||||||||    
T  31814267 gtgtttgttttaaggtaagaaattacattctttt-aatgatattttcaggaataatatttttaggaacaacattcatatctatatgtttggt 31814177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 37 - 169
Target Start/End: Original strand, 13312819 - 13312951
Alignment:
Q  37 gtttgtttcaagataagaaattacatttattggaatgatattctccggaataatatttttaggaataacattcttatctacgtgtttggtaagaattttg 136  Q
    ||||||||| ||  |||||||||||||  |||||||||||||||| |||||||||||| |||||||||||||| || | |||||||| |||| ||||| |    
T  13312819 gtttgtttcgagggaagaaattacattccttggaatgatattctcaggaataatatttataggaataacattcctacccacgtgttttgtaaaaatttag 13312918  T
Q  137 atttttcaggaatgctttagaaattatttaatt 169  Q
    |||| |  |||| | ||||||||| ||||||||    
T  13312919 atttcttgggaacgttttagaaatgatttaatt 13312951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 83 - 168
Target Start/End: Complemental strand, 4714031 - 4713946
Alignment:
Q  83 ggaataatatttttaggaataacattcttatctacgtgtttggtaagaattttgatttttcaggaatgctttagaaattatttaat 168  Q
    |||||||||||||||||||||||||||||| | | ||||||| ||| ||||| ||||| | |  |||| |||||||||||||||||    
T  4714031 ggaataatatttttaggaataacattcttacccatgtgtttgttaaaaatttagatttcttaaaaatggtttagaaattatttaat 4713946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 169
Target Start/End: Original strand, 18833529 - 18833664
Alignment:
Q  34 tgtgtttgtttcaagataagaaattacatttattggaatgatattctcc-ggaataatatttttaggaataacattcttatctacgtgtttggt-aagaa 131  Q
    ||||||| ||| ||| ||||||||||||||| || |||||||| ||||| |||||  |||||||||||||||||||| || | | ||||||||| || ||    
T  18833529 tgtgtttatttgaaggtaagaaattacatttcttagaatgata-tctccaggaat-gtatttttaggaataacattcctacccatgtgtttggtaaaaaa 18833626  T
Q  132 ttttgatttttcaggaatgctttagaaattatttaatt 169  Q
     || ||| |||   ||||| ||||||||||||||||||    
T  18833627 attagatattttgagaatgttttagaaattatttaatt 18833664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 19382415 - 19382459
Alignment:
Q  34 tgtgtttgtttcaagataagaaattacatttattggaatgatatt 78  Q
    |||||||||||||||| |||||||||||||  ||||||| |||||    
T  19382415 tgtgtttgtttcaagacaagaaattacattctttggaattatatt 19382459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 169
Target Start/End: Original strand, 40209921 - 40210056
Alignment:
Q  34 tgtgtttgtttcaagataagaaattacatttattggaatgatattctccggaataatatttttaggaataacattcttatctacgtgtttggtaagaatt 133  Q
    |||||| |||| ||| ||||||||||||||  ||| |||||||||| |  ||| ||||||  |||||||||||||| || | | ||||||||||| || |    
T  40209921 tgtgttcgttttaaggtaagaaattacattccttgaaatgatattcccaagaacaatattcctaggaataacattcctacccatgtgtttggtaaaaaat 40210020  T
Q  134 ttgatttttcaggaatgctttagaaattatttaatt 169  Q
    |||||||    |||||| || |||||||||||||||    
T  40210021 ttgatttcctcggaatgtttcagaaattatttaatt 40210056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 43093413 - 43093342
Alignment:
Q  37 gtttgtttcaagataagaaattacatttattggaatgatattctccggaataatatttttaggaataacattc 109  Q
    |||||||| ||  |||||||| |||||| ||||||||||||| || |||||||||||| ||| ||||| ||||    
T  43093413 gtttgtttgaaagtaagaaatgacatttcttggaatgatatt-tcaggaataatatttatagaaataagattc 43093342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 133
Target Start/End: Complemental strand, 34941247 - 34941148
Alignment:
Q  34 tgtgtttgtttcaagataagaaattacatttattggaatgatattctccggaataatatttttaggaataacattcttatctacgtgtttggtaagaatt 133  Q
    |||||||||||||||  |||||||||||||  || |||||| |||||  ||||||||||||  ||||||||||||| || | | ||||||||||| ||||    
T  34941247 tgtgtttgtttcaaggcaagaaattacattccttagaatgacattcttaggaataatatttcaaggaataacattcctacccatgtgtttggtaaaaatt 34941148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 11454891 - 11454817
Alignment:
Q  34 tgtgtttgtttcaagataagaaattacatttattggaatgatattctccggaataatatttttaggaataacatt 108  Q
    ||||||||||| ||  || ||||||| |||| ||||||||||||||||    |||||||||||||||||||||||    
T  11454891 tgtgtttgttttaaagtaggaaattatattttttggaatgatattctcaaacataatatttttaggaataacatt 11454817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 58352 - 58403
Alignment:
Q  118 gtgtttggtaagaattttgatttttcaggaatgctttagaaattatttaatt 169  Q
    ||||||||||| ||||| |||||||  |||||| ||||||||||||||||||    
T  58352 gtgtttggtaaaaatttggattttttgggaatgttttagaaattatttaatt 58403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 41825130 - 41825060
Alignment:
Q  35 gtgtttgtttcaagataagaaattacatttattggaatgatattctccggaataatatttttaggaataac 105  Q
    ||||||||||||||  |||||||||||||  ||| ||||| |||||  ||||||||||||  |||||||||    
T  41825130 gtgtttgtttcaaggaaagaaattacattccttgaaatgacattcttaggaataatatttcaaggaataac 41825060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University