View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20340_low_2 (Length: 561)

Name: NF20340_low_2
Description: NF20340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20340_low_2
NF20340_low_2
[»] chr8 (6 HSPs)
chr8 (19-552)||(45261179-45261708)
chr8 (263-324)||(404995-405056)
chr8 (209-314)||(44615694-44615798)
chr8 (228-298)||(29580883-29580953)
chr8 (209-314)||(5962806-5962910)
chr8 (264-304)||(12273684-12273724)
[»] chr4 (9 HSPs)
chr4 (210-300)||(37868520-37868610)
chr4 (209-254)||(3039161-3039206)
chr4 (480-543)||(49882590-49882650)
chr4 (257-317)||(52699199-52699259)
chr4 (209-260)||(3161089-3161140)
chr4 (236-314)||(40486454-40486532)
chr4 (214-304)||(43512449-43512539)
chr4 (209-253)||(13551074-13551116)
chr4 (209-301)||(5801981-5802073)
[»] chr5 (1 HSPs)
chr5 (480-543)||(2408915-2408975)
[»] chr3 (4 HSPs)
chr3 (480-543)||(33142198-33142258)
chr3 (209-313)||(32023429-32023532)
chr3 (235-317)||(40723638-40723720)
chr3 (288-324)||(45409177-45409213)
[»] chr2 (2 HSPs)
chr2 (480-543)||(16314738-16314798)
chr2 (480-541)||(42900332-42900390)
[»] chr1 (4 HSPs)
chr1 (480-543)||(33040359-33040419)
chr1 (285-317)||(7573723-7573755)
chr1 (247-317)||(49424968-49425038)
chr1 (214-259)||(4865779-4865824)
[»] scaffold0246 (1 HSPs)
scaffold0246 (236-314)||(24393-24471)
[»] chr7 (3 HSPs)
chr7 (213-271)||(5658551-5658609)
chr7 (209-253)||(9684696-9684738)
chr7 (215-300)||(18503438-18503523)
[»] scaffold0072 (1 HSPs)
scaffold0072 (244-301)||(17748-17805)
[»] scaffold0063 (1 HSPs)
scaffold0063 (236-317)||(56333-56414)
[»] chr6 (1 HSPs)
chr6 (236-300)||(2688557-2688622)


Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 552
Target Start/End: Original strand, 45261179 - 45261708
Alignment:
Q  19 ggtccagttcaagactgggataggttaagtttaggttgagttaaggagttgatgtcacatcaattggtgatattatcttagtgtaaatttgaagagaaat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45261179 ggtccagttcaagactgggataggttaagtttaggttgagttaaggagttgatgtcacatcaattgatgatattatcttagtgtaaatttgaagagaaat 45261278  T
Q  119 atcaaattacaaaagatgtaaacacaggaggctaaaatatgtttttnnnnnnnttggaaagttcaaatcgcaagatcannnnnnnnccatgtagtttagt 218  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||       ||||||||||||||| |||| ||||         |||||||||||||    
T  45261279 atcaaattacaaaagatgtaaacacatgaggctaaaataagttttttaaaaaattggaaagttcaaatagcaaaatcatttttttttcatgtagtttagt 45261378  T
Q  219 ggttgaagctcacatgttttaaatgtgaagaagtgaagtgtctcaggttcgaactccagtctctgtatatattatgcaatattcctgtcaattgagttat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||  ||||||||||||    
T  45261379 ggttgaagctcacatgttttaaatgtgaagaagtgaagtgtctcaggttcgaactccaacctctgtatatattatgcaatatccctaccaattgagttat 45261478  T
Q  319 gttcacttagatgcaaaatcataatttttagatggtcaaaagtgaaatttaaatatctacgatggatatttaatttgttttaaattttgcatacatagcc 418  Q
    | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  45261479 gctcacttagatgcaaaatcataatatttagatggtcaaaagtgaaatttaaatatctacgatggatatttaatttgttttaaattttgtatacatagcc 45261578  T
Q  419 atccacttaatttaagatgattcaaagcttggacatgggttacgatggaagcctattcattatgcttctatctatctgcaaaatgcacaaatgtagacat 518  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||   |  |||| ||||| | | ||    
T  45261579 atccacttaatttaagatgattcaaagcttggacatgggatacgatggaagcctgttcattatgcttctatctatct---atctgca-aaatgcacaaat 45261674  T
Q  519 gtagtgttgtggttgtaggttctctcctctgtgc 552  Q
    |||||||||||||||||||||||||||| |||||    
T  45261675 gtagtgttgtggttgtaggttctctcctgtgtgc 45261708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 263 - 324
Target Start/End: Original strand, 404995 - 405056
Alignment:
Q  263 aggttcgaactccagtctctgtatatattatgcaatattcctgtcaattgagttatgttcac 324  Q
    ||||||||||||||| | ||||||||| ||| ||||||||||  ||||||||||| ||||||    
T  404995 aggttcgaactccagcccctgtatataatatacaatattcctaccaattgagttaagttcac 405056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 209 - 314
Target Start/End: Complemental strand, 44615798 - 44615694
Alignment:
Q  209 gtagtttagtggttgaagctcacatgttttaaatgtgaagaagtgaagtgtctcaggttcgaactccagtctctgtatatattatgcaatattcctgtca 308  Q
    |||||||||||| |||| ||||||  |||||||||||||||| ||| |||||   ||||||||||| |  | ||| |||||||||||||| ||||  |||    
T  44615798 gtagtttagtggctgaaactcacacattttaaatgtgaagaaatgaggtgtccggggttcgaactcta-accctgcatatattatgcaatgttccgatca 44615700  T
Q  309 attgag 314  Q
    ||||||    
T  44615699 attgag 44615694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 298
Target Start/End: Complemental strand, 29580953 - 29580883
Alignment:
Q  228 tcacatgttttaaatgtgaagaagtgaagtgtctcaggttcgaactccagtctctgtatatattatgcaat 298  Q
    |||||| ||||||||||| |||||||| |||||| || ||||||| ||| |||||  ||||| ||||||||    
T  29580953 tcacatattttaaatgtggagaagtgacgtgtctgagattcgaaccccaatctctacatataatatgcaat 29580883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 314
Target Start/End: Complemental strand, 5962910 - 5962806
Alignment:
Q  209 gtagtttagtggttgaagctcacatgttttaaatgtgaagaagtgaagtgtctcaggttcgaactccagtctctgtatatattatgcaatattcctgtca 308  Q
    ||||| |||||| |||| ||||||  |||||||||||||||| ||| |||||   ||||||||||| || | ||| ||||||||| |||| ||||  |||    
T  5962910 gtagtctagtggctgaaactcacacattttaaatgtgaagaaatgaggtgtccggggttcgaactctag-ccctgcatatattatccaatgttccgatca 5962812  T
Q  309 attgag 314  Q
    ||||||    
T  5962811 attgag 5962806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 12273684 - 12273724
Alignment:
Q  264 ggttcgaactccagtctctgtatatattatgcaatattcct 304  Q
    ||||||||| |||||| ||||||||| ||||||||||||||    
T  12273684 ggttcgaaccccagtccctgtatataatatgcaatattcct 12273724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 300
Target Start/End: Original strand, 37868520 - 37868610
Alignment:
Q  210 tagtttagtggttgaagctcacatgttttaaatgtgaagaagtgaagtgtctcaggttcgaactccagtctctgtatatattatgcaatat 300  Q
    |||||||||||||  ||||||||   ||||| |||| |||||||| |||||  ||||||||||||||| | ||| ||||| ||||||||||    
T  37868520 tagtttagtggttagagctcacacaatttaattgtggagaagtgaggtgtccgaggttcgaactccagcccctgcatataatatgcaatat 37868610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 3039161 - 3039206
Alignment:
Q  209 gtagtttagtggttgaagctcacatgttttaaatgtgaagaagtga 254  Q
    ||||||||||||||||||||||||  |||||||| |||||||||||    
T  3039161 gtagtttagtggttgaagctcacacattttaaatatgaagaagtga 3039206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 480 - 543
Target Start/End: Original strand, 49882590 - 49882650
Alignment:
Q  480 atgcttctatctatctgcaaaatgcacaaatgtagacatgtagtgttgtggttgtaggttctct 543  Q
    ||||||||||||| |||||||| ||||||||||||   ||| ||||||||||||| ||||||||    
T  49882590 atgcttctatctacctgcaaaaagcacaaatgtag---tgttgtgttgtggttgtgggttctct 49882650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 317
Target Start/End: Complemental strand, 52699259 - 52699199
Alignment:
Q  257 tgtctcaggttcgaactccagtctctgtatatattatgcaatattcctgtcaattgagtta 317  Q
    ||||| ||||||||||||||  | ||||||||| |||||||||||||| |||| |||||||    
T  52699259 tgtctgaggttcgaactccaacccctgtatataatatgcaatattcctatcaactgagtta 52699199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 3161140 - 3161089
Alignment:
Q  209 gtagtttagtggttgaagctcacatgttttaaatgtgaagaagtgaagtgtc 260  Q
    |||||||||||| || ||||||||  ||||||||||| ||||||||||||||    
T  3161140 gtagtttagtggctgtagctcacacattttaaatgtggagaagtgaagtgtc 3161089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 314
Target Start/End: Complemental strand, 40486532 - 40486454
Alignment:
Q  236 tttaaatgtgaagaagtgaagtgtctcaggttcgaactccagtctctgtatatattatgcaatattcctgtcaattgag 314  Q
    |||||||||||||||||| ||||||   ||||||||| || | | ||| ||| |||||||||||| |||| ||||||||    
T  40486532 tttaaatgtgaagaagtggagtgtccggggttcgaaccccggcccctgcataaattatgcaatatccctgccaattgag 40486454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 304
Target Start/End: Complemental strand, 43512539 - 43512449
Alignment:
Q  214 ttagtggttgaagctcacatgttttaaatgtgaagaagtgaagtgtctcaggttcgaactccagtctctgtatatattatgcaatattcct 304  Q
    ||||||||| ||| || ||| |||||||||||||||| ||  ||||  | |||| ||||||||| | ||| ||||| ||||||||||||||    
T  43512539 ttagtggttaaagttcgcatattttaaatgtgaagaaatggggtgttccgggtttgaactccagcccctgcatataatatgcaatattcct 43512449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 13551116 - 13551074
Alignment:
Q  209 gtagtttagtggttgaagctcacatgttttaaatgtgaagaagtg 253  Q
    |||||||||||||| |||||||||  |||||||||||||||||||    
T  13551116 gtagtttagtggttaaagctcaca--ttttaaatgtgaagaagtg 13551074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 209 - 301
Target Start/End: Complemental strand, 5802073 - 5801981
Alignment:
Q  209 gtagtttagtggttgaagctcacatgttttaaatgtgaagaagtgaagtgtctcaggttcgaactccagtctctgtatatattatgcaatatt 301  Q
    |||||||||||||| |||||||||   |  || |||| ||||||| ||||| | |||||||||| |||| | ||| ||||| |||||||||||    
T  5802073 gtagtttagtggttaaagctcacacaataaaattgtggagaagtggagtgtgtgaggttcgaaccccagcccctgcatataatatgcaatatt 5801981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 480 - 543
Target Start/End: Original strand, 2408915 - 2408975
Alignment:
Q  480 atgcttctatctatctgcaaaatgcacaaatgtagacatgtagtgttgtggttgtaggttctct 543  Q
    ||||||||||||| |||||||| ||||||||||||   ||| ||||||||||||| ||||||||    
T  2408915 atgcttctatctacctgcaaaaagcacaaatgtag---tgttgtgttgtggttgtgggttctct 2408975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 480 - 543
Target Start/End: Complemental strand, 33142258 - 33142198
Alignment:
Q  480 atgcttctatctatctgcaaaatgcacaaatgtagacatgtagtgttgtggttgtaggttctct 543  Q
    ||||||||||||| |||||||| ||||||||||||   ||| ||||||||||||| ||||||||    
T  33142258 atgcttctatctacctgcaaaaagcacaaatgtag---tgttgtgttgtggttgtgggttctct 33142198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 313
Target Start/End: Complemental strand, 32023532 - 32023429
Alignment:
Q  209 gtagtttagtggttgaagctcacatgttttaaatgtgaagaagtgaagtgtctcaggttcgaactccagtctctgtatatattatgcaatattcctgtca 308  Q
    ||||| |||||| |||| ||||||  |||||||||||||||| ||| |||| |  ||||| ||||| || | ||| |||||||||||||| ||||| |||    
T  32023532 gtagtctagtggctgaaactcacacattttaaatgtgaagaaatgaggtgtatggggttcaaactctag-ccctgcatatattatgcaatgttcctatca 32023434  T
Q  309 attga 313  Q
    |||||    
T  32023433 attga 32023429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 40723638 - 40723720
Alignment:
Q  235 ttttaaatgtgaagaagtgaagtgtctcaggttcgaactccagtctctgtatatattatgcaatattcctgtcaattgagtta 317  Q
    ||||||||||| |||||||| |||||| |||||||||| |||| ||| | |||||  ||||||||| |||  ||| |||||||    
T  40723638 ttttaaatgtggagaagtgaggtgtctaaggttcgaaccccagcctccgcatataacatgcaatatccctaccaactgagtta 40723720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 45409213 - 45409177
Alignment:
Q  288 tattatgcaatattcctgtcaattgagttatgttcac 324  Q
    |||| |||||||||||| |||||||||||||||||||    
T  45409213 tattttgcaatattcctatcaattgagttatgttcac 45409177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 480 - 543
Target Start/End: Complemental strand, 16314798 - 16314738
Alignment:
Q  480 atgcttctatctatctgcaaaatgcacaaatgtagacatgtagtgttgtggttgtaggttctct 543  Q
    ||||||||||||| |||||||| ||||||||||||   ||| ||||||||||||| ||||||||    
T  16314798 atgcttctatctacctgcaaaaagcacaaatgtag---tgttgtgttgtggttgtgggttctct 16314738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 541
Target Start/End: Complemental strand, 42900390 - 42900332
Alignment:
Q  480 atgcttctatctatctgcaaaatgcacaaatgtagacatgtagtgttgtggttgtaggttct 541  Q
    ||||||||||||| |||||||| ||||||||||||   ||| ||||||||||||| ||||||    
T  42900390 atgcttctatctacctgcaaaaagcacaaatgtag---tgttgtgttgtggttgtgggttct 42900332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 480 - 543
Target Start/End: Original strand, 33040359 - 33040419
Alignment:
Q  480 atgcttctatctatctgcaaaatgcacaaatgtagacatgtagtgttgtggttgtaggttctct 543  Q
    ||||||||||||| |||||||| ||||||||||||   ||| ||||||||||||| ||||||||    
T  33040359 atgcttctatctacctgcaaaaagcacaaatgtag---tgttgtgttgtggttgtgggttctct 33040419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 317
Target Start/End: Original strand, 7573723 - 7573755
Alignment:
Q  285 atatattatgcaatattcctgtcaattgagtta 317  Q
    |||||||||||||||||||||||||||||||||    
T  7573723 atatattatgcaatattcctgtcaattgagtta 7573755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 317
Target Start/End: Original strand, 49424968 - 49425038
Alignment:
Q  247 agaagtgaagtgtctcaggttcgaactccagtctctgtatatattatgcaatattcctgtcaattgagtta 317  Q
    ||||||| ||||||  | |||||||||||||| |||| ||||| |||||||||| |||  |||||||||||    
T  49424968 agaagtggagtgtccgatgttcgaactccagtttctgcatataatatgcaatatccctaccaattgagtta 49425038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 4865779 - 4865824
Alignment:
Q  214 ttagtggttgaagctcacatgttttaaatgtgaagaagtgaagtgt 259  Q
    |||||||||| ||||||||| | ||||||||||||||||| |||||    
T  4865779 ttagtggttgtagctcacatatattaaatgtgaagaagtggagtgt 4865824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 314
Target Start/End: Complemental strand, 24471 - 24393
Alignment:
Q  236 tttaaatgtgaagaagtgaagtgtctcaggttcgaactccagtctctgtatatattatgcaatattcctgtcaattgag 314  Q
    |||||||||||||||||| ||||||   ||||||||| || | | ||| ||| |||||||||||| |||| ||||||||    
T  24471 tttaaatgtgaagaagtggagtgtccggggttcgaaccccggcccctgcataaattatgcaatatccctgccaattgag 24393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 5658551 - 5658609
Alignment:
Q  213 tttagtggttgaagctcacatgttttaaatgtgaagaagtgaagtgtctcaggttcgaa 271  Q
    |||||||| |||||||||||| ||||||||||| |||||||  |||||| || ||||||    
T  5658551 tttagtggctgaagctcacatattttaaatgtggagaagtgtggtgtctgagattcgaa 5658609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 9684738 - 9684696
Alignment:
Q  209 gtagtttagtggttgaagctcacatgttttaaatgtgaagaagtg 253  Q
    |||||||||||||| |||||||||  |||||||||||||||||||    
T  9684738 gtagtttagtggttaaagctcaca--ttttaaatgtgaagaagtg 9684696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 300
Target Start/End: Original strand, 18503438 - 18503523
Alignment:
Q  215 tagtggttgaagctcacatgttttaaatgtgaagaagtgaagtgtctcaggttcgaactccagtctctgtatatattatgcaatat 300  Q
    |||||||| |||||||||  ||||||||||| |||||||  ||||||  |||||||||  ||| | ||| ||||| ||||||||||    
T  18503438 tagtggttaaagctcacacattttaaatgtggagaagtggggtgtctggggttcgaacctcagcccctgcatataatatgcaatat 18503523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 17748 - 17805
Alignment:
Q  244 tgaagaagtgaagtgtctcaggttcgaactccagtctctgtatatattatgcaatatt 301  Q
    |||| |||||| |||||| |||||||||||||| || ||| |||||||||||| ||||    
T  17748 tgaataagtgaggtgtctgaggttcgaactccaatccctgcatatattatgcattatt 17805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 317
Target Start/End: Complemental strand, 56414 - 56333
Alignment:
Q  236 tttaaatgtgaagaagtgaagtgtctcaggttcgaactccagtctctgtatatattatgcaatattcctgtcaattgagtta 317  Q
    ||||| |||| |||| ||||||||||  ||||||||| || | | ||| ||||| |||||||||| |||| |||||||||||    
T  56414 tttaattgtggagaaatgaagtgtctggggttcgaaccccggcccctgcatataatatgcaatatccctgccaattgagtta 56333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 300
Target Start/End: Original strand, 2688557 - 2688622
Alignment:
Q  236 tttaaatgtgaagaagtg-aagtgtctcaggttcgaactccagtctctgtatatattatgcaatat 300  Q
    ||||| |||| ||||||| |||||||   |||||||||||||| ||||||||||| ||||||||||    
T  2688557 tttaattgtggagaagtggaagtgtccggggttcgaactccagcctctgtatataatatgcaatat 2688622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University