View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20340_low_20 (Length: 312)

Name: NF20340_low_20
Description: NF20340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20340_low_20
NF20340_low_20
[»] chr3 (4 HSPs)
chr3 (33-296)||(53491223-53491486)
chr3 (33-296)||(53498819-53499079)
chr3 (88-296)||(16069958-16070165)
chr3 (174-212)||(53516478-53516516)
[»] chr7 (1 HSPs)
chr7 (141-293)||(45355289-45355440)


Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 33 - 296
Target Start/End: Original strand, 53491223 - 53491486
Alignment:
Q  33 aacctgtgaaaaattgaagtgatttatttggtatctcattgaacataaacagtagaagcaaaatgacatatgtaagaatataagagcaacaacaagacaa 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53491223 aacctgtgaaaaattgaagtgatttatttggtatctcattgaacataaacagtagaagcaaaatgacatatgtaagaatataagagcaacaacaagacaa 53491322  T
Q  133 catagataacctgcttatttactaaatcctttggcccaatttcaatccttagagggacacctttcaattcccaatcagaatacttcctttcaggagaaca 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53491323 catagataacctgcttatttactaaatcctttggcccaatttcaatccttagagggacacctttcaattcccaatcagaatacttcctttcaggagaaca 53491422  T
Q  233 gttatctctagaatctaactcagcacgtattttttgcttcacacaacatattcacagttgcttt 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53491423 gttatctctagaatctaactcagcacgtattttttgcttcacacaacatattcacagttgcttt 53491486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 33 - 296
Target Start/End: Original strand, 53498819 - 53499079
Alignment:
Q  33 aacctgtgaaaaattgaagtgatttatttggtatctcattgaacataaacagtagaagcaaaatgacatatgtaagaatataagagcaacaacaagacaa 132  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||| |  |||||||||||||||||| ||  |||||||||||||||||||| |||||    
T  53498819 aacctgtgcaaaattgaagtgatttatttggtgtctcattgaacatacagggtagaagcaaaatgacatgtg--agaatataagagcaacaacaggacaa 53498916  T
Q  133 catagataacctgcttatttactaaatcctttggcccaatttcaatccttagagggacacctttcaattcccaatcagaatacttcctttcaggagaaca 232  Q
    ||||||||||||| |||||| |||||||| |||||| ||||||||||||||||||||| ||||||| |||||| |||||||||||| ||||||||||  |    
T  53498917 catagataacctgtttattttctaaatccattggcctaatttcaatccttagagggacgcctttcatttcccattcagaatacttcttttcaggagagta 53499016  T
Q  233 gttatctctagaatctaactcagcacgtattttttgcttcacacaacatattcacagttgcttt 296  Q
    | ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  53499017 gctatctctagaatctaactcagcacgta-tttttgcttcacacagcatattcacagttgcttt 53499079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 88 - 296
Target Start/End: Original strand, 16069958 - 16070165
Alignment:
Q  88 aagcaaaatgacatatgtaagaatataagagcaacaacaagacaacatagataacctgcttatttactaaatcctttggcccaatttcaatccttagagg 187  Q
    ||||| ||||||||||| ||||||| ||| |||| || |  |||||||  ||||||||||||||| ||||| ||||| |||||||||||| | ||| |||    
T  16069958 aagcataatgacatatgaaagaatacaagtgcaataatataacaacattaataacctgcttatttcctaaaccctttagcccaatttcaaccattaaagg 16070057  T
Q  188 gacacctttcaattcccaatcagaatacttcctttcaggagaacagttatctctagaatctaactcagcacgtattttttgcttcacacaacatattcac 287  Q
    ||||||||||| |||||| ||||||||||| |||||| ||||| |||||||||||||||||||||| ||||| ||||||| |||||| |||||| |||||    
T  16070058 gacacctttcatttcccattcagaatactttctttcaagagaatagttatctctagaatctaactcggcacgaatttttt-cttcacgcaacatcttcac 16070156  T
Q  288 agttgcttt 296  Q
     | ||||||    
T  16070157 ggctgcttt 16070165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 53516478 - 53516516
Alignment:
Q  174 tcaatccttagagggacacctttcaattcccaatcagaa 212  Q
    ||||||||||||||||||||||||| |||||| ||||||    
T  53516478 tcaatccttagagggacacctttcatttcccattcagaa 53516516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 141 - 293
Target Start/End: Complemental strand, 45355440 - 45355289
Alignment:
Q  141 acctgcttatttactaaatcctttggcccaatttcaatccttagagggacacctttcaattcccaatcagaatacttcctttcaggagaacagttatctc 240  Q
    |||||||||||| |||||||||| ||||| ||||||||||||||||| |||||||||| |||||| | |||||| |||| | |||||||| |||| ||||    
T  45355440 acctgcttatttgctaaatccttgggcccgatttcaatccttagaggaacacctttcatttcccactgagaatatttccatccaggagaatagttgtctc 45355341  T
Q  241 tagaatctaactcagcacgtattttttgcttcacacaacatattcacagttgc 293  Q
    | | |||| |||||||||| | ||  ||||||  |||||||||||||||||||    
T  45355340 tggcatctgactcagcacg-aattcctgcttccaacaacatattcacagttgc 45355289  T

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