View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20340_low_22 (Length: 305)
Name: NF20340_low_22
Description: NF20340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20340_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 41819538 - 41819825
Alignment:
| Q |
1 |
catgtgtcggtgttgaacacggagacatgtcagacaccaaacatgtttttgatgtgaagtatcggtgctgcgtatattgaaactgcatcattttcaatga |
100 |
Q |
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| T |
41819538 |
catgtgtcggtgttgaacacggagacatgtcagacaccaaacatgtttttgatgtgaagtatcggtgctgcgtatattgaaactgcatcattttcaatga |
41819637 |
T |
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| Q |
101 |
ttctttaagattgatgtagattaaaatatagcagattaaacacatggatgaatttacataccatggagaaggctgaatatgcaaaatcagatgccccaaa |
200 |
Q |
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| T |
41819638 |
ttctttaagattgatgtagattaaaatatagcagattaaacacatggatgaatttacataccatggagaaggctgaatatgcaaaatcagatgccccaaa |
41819737 |
T |
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| Q |
201 |
gttgacaccatcaaatacaaaggccaaacagttcaggggttgagtgagtgctacaaactggaaagagagttaatatgaatgtaagttc |
288 |
Q |
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| T |
41819738 |
gttgacaccatcaaatacaaaggccaaacagttcaggggttgagtgagtgctacaaactggaaagagagttaatatgaatgtaagttc |
41819825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 41819503 - 41819537
Alignment:
| Q |
1 |
catgtgtcggtgttgaacacggagacatgtcagac |
35 |
Q |
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| T |
41819503 |
catgtgtcagtgttgaacacggagacatgtcagac |
41819537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 9279063 - 9278998
Alignment:
| Q |
159 |
taccatggagaaggctgaatatgcaaaatcagatgccccaaagttgacaccatcaaatacaaaggc |
224 |
Q |
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| T |
9279063 |
taccaaggagtatgctgaataagcgaaatcagatgctccatagttcacaccatcaaagacaaaggc |
9278998 |
T |
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