View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20340_low_24 (Length: 298)
Name: NF20340_low_24
Description: NF20340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20340_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 5e-90; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 57 - 228
Target Start/End: Original strand, 27848318 - 27848489
Alignment:
| Q |
57 |
cgaagcaggcggtggatatggtcctgatggaccaggtacgggaagtggtggatttgttcctggttacccgggtgtaggaggtggtggatttgttcctggg |
156 |
Q |
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| T |
27848318 |
cgaagcaggcggtggatatggtcctgatggaccaggtacgggaagtggtggatttgttcctggttacccgggtgtaggaggtggtggatttgttcctggg |
27848417 |
T |
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| Q |
157 |
gtaggaggcggtgaatgtgtccctggttacccgtgtgaaggaagtggtggacatgttcctggtggagaagac |
228 |
Q |
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| T |
27848418 |
gtaggaggcggtgaatgtgtcccaggttacccgtgtgaaggaagtggtggacatgttcctggtggagaagac |
27848489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 222
Target Start/End: Original strand, 27848490 - 27848609
Alignment:
| Q |
103 |
ggtggatttgttcctggttacccgggtgtaggaggtggtggatttgttcctggggtaggaggcggtgaatgtgtccctggttacccgtgtgaaggaagtg |
202 |
Q |
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| T |
27848490 |
ggtggatatgttcctggtggaccgggtgaaggagttggtggacatgttcctggtggaggagacggtggatatgttcctggtggaccgggtgaaggagttg |
27848589 |
T |
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| Q |
203 |
gtggacatgttcctggtgga |
222 |
Q |
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| T |
27848590 |
gtggacatgttcctggtgga |
27848609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 228
Target Start/End: Original strand, 27848442 - 27848552
Alignment:
| Q |
118 |
ggttacccgggtgtaggaggtggtggatttgttcctggggtaggaggcggtgaatgtgtccctggttacccgtgtgaaggaagtggtggacatgttcctg |
217 |
Q |
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| T |
27848442 |
ggttacccgtgtgaaggaagtggtggacatgttcctggtggagaagacggtggatatgttcctggtggaccgggtgaaggagttggtggacatgttcctg |
27848541 |
T |
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| Q |
218 |
gtggagaagac |
228 |
Q |
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| T |
27848542 |
gtggaggagac |
27848552 |
T |
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