View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20340_low_26 (Length: 290)
Name: NF20340_low_26
Description: NF20340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20340_low_26 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 17654412 - 17654675
Alignment:
| Q |
1 |
ttcgtgtttaaagggatttttgaagggaaggtaaattggtaccagcaaagaatcaaggaatcatcattatgtttttggtttcgaaagaaattccctcaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17654412 |
ttcgtgtttaaagggatttttgaagggaaggtaaattggtaccagcaaggaatcaaggaatcatcattatgtttttggtttcgaaagaaattccctcaga |
17654511 |
T |
|
| Q |
101 |
tagctctatgttgtgctggagaaggagaacctcctatgtataaagacaatatgttgttggatttcaagttgagtgtactcatcaatggcactaagcaatt |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17654512 |
tagctctatgttgtgctggag------aacctcctatgtataaagacaatatgctgttggatttcaagttgagtgtactcatcaatggcactaagcaatt |
17654605 |
T |
|
| Q |
201 |
cacttcttcatgtaactacatattttctgcaggaaggatatcagaccaaatacttatgtgtgatttagtg |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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|
| T |
17654606 |
cacttcttcatgtaactacatattttctgcaggaagcaaatcagaccaaatacttatgtgtgatttagtg |
17654675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 17727998 - 17728255
Alignment:
| Q |
1 |
ttcgtgtttaaagggatttttgaagggaaggtaaattggtaccagcaaagaatcaaggaatcatcattatgtttttggtttcgaaagaaattccctcaga |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17727998 |
ttcgtgtttaaaggaatttttgaagggagagtaaattgataccagcaa--------ggaatcatcattatgtttttggtttcgaaagaaattccctcaga |
17728089 |
T |
|
| Q |
101 |
tagctctatgttgtgctggagaaggagaacctcctatgtataaagacaatatgttgttggatttcaagttgagtgtactcatcaatggcactaagcaatt |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17728090 |
tagctctatgttgtgctggag------aacctcctatgcataaagacaatatgttgttggatttcaagttgagtgtactcatcaatggcactaagcaatt |
17728183 |
T |
|
| Q |
201 |
cacttcttcatgtaactacatattttctgcaggaaggatatcagaccaaatacttatgtgtgatttagtgtg |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17728184 |
cacttcttcatgtaactacatattttctgcaggaaggatatcagaccaaatacttatgtgtgatttagtgtg |
17728255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 17708626 - 17708864
Alignment:
| Q |
1 |
ttcgtgtttaaagggatttttgaagggaaggtaaattggtaccagcaaagaatcaaggaatcatcattatgtttttggtttcgaaagaaattccctcaga |
100 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17708626 |
ttcgtgtttaaagggattttttaagggagagtaaattgataccagcaaggaatcaaggaagcatcattatgtttttggtttcgaaagaaattccctcaga |
17708725 |
T |
|
| Q |
101 |
tagctctatgttgtgctggagaaggagaacctcctatgtataaagacaatatgttgttggatttcaagttgagtgtactcatcaatggcactaagcaatt |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
17708726 |
tagctctatgttgtgct------ggagaacctcctatgtataaagacaatatgttgttggatttcaagttgagtgtactcatcaatggcactaagaaatt |
17708819 |
T |
|
| Q |
201 |
cacttcttcatgtaactacatattttctgcaggaaggatatcagaccaaata |
252 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17708820 |
cacttcttcatgtaac-------tttctgcaggaaggatatcagaccaaata |
17708864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 58 - 230
Target Start/End: Original strand, 17664733 - 17664899
Alignment:
| Q |
58 |
gaatcatcattatgtttttggtttcgaaagaaattccctcagatagctctatgttgtgctggagaaggagaacctcctatgtataaagacaatatgttgt |
157 |
Q |
| |
|
|||||||| ||| | |||||||||| ||| |||||||| ||||||||| |||||||||| |||| |||||| ||| ||||||||||||||||| |
|
|
| T |
17664733 |
gaatcatccttacgattttggtttcaaaataaattccccaggatagctctgtgttgtgctgtagaa------cctcctgtgtgtaaagacaatatgttgt |
17664826 |
T |
|
| Q |
158 |
tggatttcaagttgagtgtactcatcaatggcactaagcaattcacttcttcatgtaactacatattttctgc |
230 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17664827 |
tggatttcaagttgagtgttcttatcaatggcactgagcaattcacttcttcatgcaactacatattttctgc |
17664899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 59 - 230
Target Start/End: Original strand, 17645860 - 17646025
Alignment:
| Q |
59 |
aatcatcattatgtttttggtttcgaaagaaattccctcagatagctctatgttgtgctggagaaggagaacctcctatgtataaagacaatatgttgtt |
158 |
Q |
| |
|
||||||| ||| |||||||||||| ||| |||||||| |||| |||| |||||||||| |||| |||||| ||| |||||||||||||||||| |
|
|
| T |
17645860 |
aatcatccttacgtttttggtttcaaaataaattccccaggataactctgtgttgtgctgtagaa------cctcctgtgtgtaaagacaatatgttgtt |
17645953 |
T |
|
| Q |
159 |
ggatttcaagttgagtgtactcatcaatggcactaagcaattcacttcttcatgtaactacatattttctgc |
230 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17645954 |
ggatttcaagttaagtgttctcatcaatggcactgagcaattcacttcttcatgcaactacatattttctgc |
17646025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 126 - 230
Target Start/End: Original strand, 17715521 - 17715625
Alignment:
| Q |
126 |
agaacctcctatgtataaagacaatatgttgttggatttcaagttgagtgtactcatcaatggcactaagcaattcacttcttcatgtaactacatattt |
225 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
17715521 |
agaacctcctgtgtgtaaagacaatatgttgttggatttcaagttgagtgttctcatcaatggcactgagcaattcacttcttcatgcaactacatattt |
17715620 |
T |
|
| Q |
226 |
tctgc |
230 |
Q |
| |
|
||||| |
|
|
| T |
17715621 |
tctgc |
17715625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 58 - 230
Target Start/End: Original strand, 17620246 - 17620412
Alignment:
| Q |
58 |
gaatcatcattatgtttttggtttcgaaagaaattccctcagatagctctatgttgtgctggagaaggagaacctcctatgtataaagacaatatgttgt |
157 |
Q |
| |
|
|||||||| ||| | |||||||||| ||| |||||||| ||||||||| |||||||||| |||| |||||| ||| ||||||||||||||||| |
|
|
| T |
17620246 |
gaatcatccttacgattttggtttcaaaataaattccccaggatagctctgtgttgtgctgtagaa------cctcctgtgtgtaaagacaatatgttgt |
17620339 |
T |
|
| Q |
158 |
tggatttcaagttgagtgtactcatcaatggcactaagcaattcacttcttcatgtaactacatattttctgc |
230 |
Q |
| |
|
|||||||||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
17620340 |
tggatttcaatttaagtgttctcatcaatggcactaagcaattcacttcttcatgcaactacatgttttctgc |
17620412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 58 - 267
Target Start/End: Original strand, 17702053 - 17702256
Alignment:
| Q |
58 |
gaatcatcattatgtttttggtttcgaaagaaattccctcagatagctctatgttgtgctggagaaggagaacctcctatgtataaagacaatatgttgt |
157 |
Q |
| |
|
|||||||| ||| ||||||||||| ||| |||||||| |||| ||||| |||||||||| | || |||||| ||| ||||| ||||||||||| |
|
|
| T |
17702053 |
gaatcatccttacatttttggtttcaaaataaattccccaagattgctctttgttgtgctgtaaaa------cctcctgtgtgtaaaggcaatatgttgt |
17702146 |
T |
|
| Q |
158 |
tggatttcaagttgagtgtactcatcaatggcactaagcaattcacttcttcatgtaactacatattttctgcaggaaggatatcagaccaaatacttat |
257 |
Q |
| |
|
|||||||||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| | || ||| | || ||| | ||||| |
|
|
| T |
17702147 |
tggatttcaatttcagtgtgctcatcaatggcactaagcaattcacttcttcatgcaactacatgttttctgctgaaaaaataactgaacaagttcttat |
17702246 |
T |
|
| Q |
258 |
gtgtgattta |
267 |
Q |
| |
|
|||||||||| |
|
|
| T |
17702247 |
gtgtgattta |
17702256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 255
Target Start/End: Original strand, 17721663 - 17721746
Alignment:
| Q |
172 |
agtgtactcatcaatggcactaagcaattcacttcttcatgtaactacatattttctgcaggaaggatatcagaccaaatactt |
255 |
Q |
| |
|
||||| |||| |||| |||| || ||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
17721663 |
agtgttctcaacaatcacactgagaaatccacttcttcatgtaactacatattttctccaggaaggatatcagatcaaatactt |
17721746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 146 - 226
Target Start/End: Complemental strand, 5980713 - 5980633
Alignment:
| Q |
146 |
acaatatgttgttggatttcaagttgagtgtactcatcaatggcactaagcaattcacttcttcatgtaactacatatttt |
226 |
Q |
| |
|
|||| ||| |||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||| | |||||||||| |
|
|
| T |
5980713 |
acaacatggtgttggatttcaagctgaacgtactcatcaatggcactaagcaactcacttcttcatgtcaatacatatttt |
5980633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 5877585 - 5877517
Alignment:
| Q |
145 |
gacaatatgttgttggatttcaagttgagtgtactcatcaatggcactaagcaattcacttcttcatgt |
213 |
Q |
| |
|
||||||||| | |||||||||||||||| ||||||||||||||||||||||||| || || |||||||| |
|
|
| T |
5877585 |
gacaatatggttttggatttcaagttgaatgtactcatcaatggcactaagcaactctctacttcatgt |
5877517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 5914945 - 5914880
Alignment:
| Q |
158 |
tggatttcaagttgagtgtactcatcaatggcactaagcaattcacttcttcatgtaactacatat |
223 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| || || |||||||| | ||||||| |
|
|
| T |
5914945 |
tggatttcaagttgaatgtactcatcaatggcactaagcaactctctacttcatgtgaatacatat |
5914880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 5902192 - 5902136
Alignment:
| Q |
155 |
tgttggatttcaagttgagtgtactcatcaatggcactaagcaattcacttcttcat |
211 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| || || |||||| |
|
|
| T |
5902192 |
tgttggatttcaagttgaatgtactcatcaatggcactaagcaactctctacttcat |
5902136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 5974714 - 5974643
Alignment:
| Q |
155 |
tgttggatttcaagttgagtgtactcatcaatggcactaagcaattcacttcttcatgtaactacatatttt |
226 |
Q |
| |
|
|||| |||||||| |||| | ||||||||||||||||||| || |||||||||||||||| |||||||||| |
|
|
| T |
5974714 |
tgttagatttcaaattgaatctactcatcaatggcactaataaactcacttcttcatgtaaatacatatttt |
5974643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 5971841 - 5971772
Alignment:
| Q |
157 |
ttggatttcaagttgagtgtactcatcaatggcactaagcaattcacttcttcatgtaactacatatttt |
226 |
Q |
| |
|
|||||||| ||||||| | ||||||||||||||||| ||||| | | |||||||||| | |||||||||| |
|
|
| T |
5971841 |
ttggattttaagttgaatatactcatcaatggcactgagcaacttatttcttcatgtgaatacatatttt |
5971772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 5921294 - 5921207
Alignment:
| Q |
145 |
gacaatatgttgttggatttcaagttgagtgtactcatcaatggcactaagcaattcacttcttcatgtaactacatattttctgcag |
232 |
Q |
| |
|
||||| ||| |||||||||| ||||| | ||||||| | ||||| |||||||| | |||||||||||| ||||||||||| ||||| |
|
|
| T |
5921294 |
gacaacatggtgttggattttaagttcaatgtactcgttaatggtactaagcaccttacttcttcatgtgtctacatattttatgcag |
5921207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 5921374 - 5921318
Alignment:
| Q |
59 |
aatcatcattatgtttttggtttcgaaagaaattccctcagatagctctatgttgtg |
115 |
Q |
| |
|
|||||||| | ||||||||||| ||||| |||||||| ||||||||||||| |||| |
|
|
| T |
5921374 |
aatcatcagtgtgtttttggttccgaaaaaaattccccgagatagctctatggtgtg |
5921318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 226
Target Start/End: Complemental strand, 4203708 - 4203628
Alignment:
| Q |
146 |
acaatatgttgttggatttcaagttgagtgtactcatcaatggcactaagcaattcacttcttcatgtaactacatatttt |
226 |
Q |
| |
|
|||||||| || ||||| ||||||| | |||| ||||||| |||||||||||| || || |||| ||| | |||||||||| |
|
|
| T |
4203708 |
acaatatggtgctggatgtcaagttcaatgtagtcatcaacggcactaagcaactctctacttcgtgtgaatacatatttt |
4203628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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