View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20340_low_3 (Length: 546)

Name: NF20340_low_3
Description: NF20340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20340_low_3
NF20340_low_3
[»] chr5 (3 HSPs)
chr5 (10-532)||(10499436-10499958)
chr5 (478-515)||(32623219-32623256)
chr5 (478-514)||(12744957-12744993)
[»] chr3 (7 HSPs)
chr3 (474-511)||(54126657-54126694)
chr3 (478-515)||(3970495-3970532)
chr3 (478-515)||(4072404-4072441)
chr3 (478-515)||(12789610-12789647)
chr3 (478-515)||(13078167-13078204)
chr3 (474-515)||(26976972-26977013)
chr3 (478-515)||(32237398-32237435)
[»] chr6 (2 HSPs)
chr6 (474-509)||(33533960-33533995)
chr6 (476-514)||(1681194-1681232)
[»] chr7 (2 HSPs)
chr7 (474-509)||(33355309-33355344)
chr7 (478-515)||(34052283-34052320)
[»] chr1 (5 HSPs)
chr1 (474-508)||(32029655-32029689)
chr1 (478-515)||(4299525-4299562)
chr1 (478-515)||(14387145-14387182)
chr1 (478-515)||(25297977-25298014)
chr1 (478-515)||(47940701-47940738)
[»] chr8 (3 HSPs)
chr8 (478-515)||(13886538-13886575)
chr8 (478-515)||(33390776-33390813)
chr8 (478-515)||(38629604-38629641)
[»] chr4 (2 HSPs)
chr4 (474-515)||(3422559-3422600)
chr4 (478-515)||(42274623-42274660)
[»] chr2 (3 HSPs)
chr2 (478-515)||(1924111-1924148)
chr2 (478-514)||(10553012-10553048)
chr2 (478-514)||(22269726-22269762)


Alignment Details
Target: chr5 (Bit Score: 462; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 10 - 532
Target Start/End: Original strand, 10499436 - 10499958
Alignment:
Q  10 aaatgaagaatatgtgttaaatagtagaaatagaacaagaaacaaactatacaaacttttaggagtttaactttagagacactcacccagagcttctatc 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  10499436 aaatgaagaatatgtgttaaatagtagaaatagaacaagaaacaaattatacatacttttaggagtttaactttagagacactcaccaagagcttctatc 10499535  T
Q  110 agcatttgaattactttactacggtttaccaagtatcccaaaaaagattctgcaacgaatgcagagccctgcatgtaaaattgaatgatacattaaaaca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  10499536 agcatttgaattactttactacggtttaccaagtatcccaaaaaagactctgcaacgaatgtggagccctgcatgtaaaattgaatgatacattaaaaca 10499635  T
Q  210 aaattcatcaacatagcatactgattgtaatattgcttaatttttcgaaacttagtcaattgattcaaccagtttgacaaggtgggtaatcttctaagaa 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10499636 aaattcatcaacatagcatactgattgtaatattgcttaatttttcgaaacttagtcaattgattcaaccagtttgacaaggtgtgtaatcttctaagaa 10499735  T
Q  310 tgtagttagttaagttttccagtttcaaatatgcacactttccgttattcttaccaagggttaagcctgacatgtacttacggtcagttagagatttgat 409  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10499736 tgtagttagttaagttttcgagtttcaaatatgcacactttccattattcttaccaagggttaagcctgacatgtacttacggacagttagagatttgat 10499835  T
Q  410 tcagtgtatgaagtaaaacaataagaatcaaatagaatctaaacctatgaaatcattnnnnnnnggacaaaacttaggtgcatttccttaggtgtttttc 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  10499836 tcagtgtatgaagtaaaacaataagaatcaaatagaatctaaacctatgaaatcattaaaaaaaggacaaaacttaggtgcatttccttaggtgtttttc 10499935  T
Q  510 gtatggattgcttagttaagaac 532  Q
    |||||||||||||||||||||||    
T  10499936 gtatggattgcttagttaagaac 10499958  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 515
Target Start/End: Original strand, 32623219 - 32623256
Alignment:
Q  478 aaaacttaggtgcatttccttaggtgtttttcgtatgg 515  Q
    ||||||||||| || |||||||||||||||||||||||    
T  32623219 aaaacttaggtacaattccttaggtgtttttcgtatgg 32623256  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 514
Target Start/End: Complemental strand, 12744993 - 12744957
Alignment:
Q  478 aaaacttaggtgcatttccttaggtgtttttcgtatg 514  Q
    ||||||||||| || ||||||||||||||||||||||    
T  12744993 aaaacttaggtacaattccttaggtgtttttcgtatg 12744957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 474 - 511
Target Start/End: Complemental strand, 54126694 - 54126657
Alignment:
Q  474 ggacaaaacttaggtgcatttccttaggtgtttttcgt 511  Q
    ||||||||||||||||||||||||||||||||||||||    
T  54126694 ggacaaaacttaggtgcatttccttaggtgtttttcgt 54126657  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 515
Target Start/End: Original strand, 3970495 - 3970532
Alignment:
Q  478 aaaacttaggtgcatttccttaggtgtttttcgtatgg 515  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  3970495 aaaacttaggtgcaattccttaggtgcttttcgtatgg 3970532  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 515
Target Start/End: Complemental strand, 4072441 - 4072404
Alignment:
Q  478 aaaacttaggtgcatttccttaggtgtttttcgtatgg 515  Q
    ||||||||||| || |||||||||||||||||||||||    
T  4072441 aaaacttaggtacaattccttaggtgtttttcgtatgg 4072404  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 515
Target Start/End: Original strand, 12789610 - 12789647
Alignment:
Q  478 aaaacttaggtgcatttccttaggtgtttttcgtatgg 515  Q
    ||||||||||| || |||||||||||||||||||||||    
T  12789610 aaaacttaggtacaattccttaggtgtttttcgtatgg 12789647  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 515
Target Start/End: Original strand, 13078167 - 13078204
Alignment:
Q  478 aaaacttaggtgcatttccttaggtgtttttcgtatgg 515  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  13078167 aaaacttaggtgcaattccttaggtgcttttcgtatgg 13078204  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 515
Target Start/End: Complemental strand, 26977013 - 26976972
Alignment:
Q  474 ggacaaaacttaggtgcatttccttaggtgtttttcgtatgg 515  Q
    ||||||||||||||| || ||| |||||||||||||||||||    
T  26977013 ggacaaaacttaggtacaattctttaggtgtttttcgtatgg 26976972  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 515
Target Start/End: Original strand, 32237398 - 32237435
Alignment:
Q  478 aaaacttaggtgcatttccttaggtgtttttcgtatgg 515  Q
    ||||||||||| || |||||||||||||||||||||||    
T  32237398 aaaacttaggtacaattccttaggtgtttttcgtatgg 32237435  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 474 - 509
Target Start/End: Original strand, 33533960 - 33533995
Alignment:
Q  474 ggacaaaacttaggtgcatttccttaggtgtttttc 509  Q
    ||||||||||||||||||||||||||||||||||||    
T  33533960 ggacaaaacttaggtgcatttccttaggtgtttttc 33533995  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 476 - 514
Target Start/End: Complemental strand, 1681232 - 1681194
Alignment:
Q  476 acaaaacttaggtgcatttccttaggtgtttttcgtatg 514  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  1681232 acaaaacttaggtgcatttctgtaggtgtttttcgtatg 1681194  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 474 - 509
Target Start/End: Complemental strand, 33355344 - 33355309
Alignment:
Q  474 ggacaaaacttaggtgcatttccttaggtgtttttc 509  Q
    |||||||||||||||||||||||||||||| |||||    
T  33355344 ggacaaaacttaggtgcatttccttaggtgcttttc 33355309  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 515
Target Start/End: Original strand, 34052283 - 34052320
Alignment:
Q  478 aaaacttaggtgcatttccttaggtgtttttcgtatgg 515  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  34052283 aaaacttaggtacatttccttaggtgcttttcgtatgg 34052320  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 508
Target Start/End: Complemental strand, 32029689 - 32029655
Alignment:
Q  474 ggacaaaacttaggtgcatttccttaggtgttttt 508  Q
    |||||||||||||||||||||| ||||||||||||    
T  32029689 ggacaaaacttaggtgcatttcgttaggtgttttt 32029655  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 515
Target Start/End: Complemental strand, 4299562 - 4299525
Alignment:
Q  478 aaaacttaggtgcatttccttaggtgtttttcgtatgg 515  Q
    ||||||||||| || |||||||||||||||||||||||    
T  4299562 aaaacttaggtacaattccttaggtgtttttcgtatgg 4299525  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 515
Target Start/End: Complemental strand, 14387182 - 14387145
Alignment:
Q  478 aaaacttaggtgcatttccttaggtgtttttcgtatgg 515  Q
    ||||||||||| || |||||||||||||||||||||||    
T  14387182 aaaacttaggtacaattccttaggtgtttttcgtatgg 14387145  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 515
Target Start/End: Complemental strand, 25298014 - 25297977
Alignment:
Q  478 aaaacttaggtgcatttccttaggtgtttttcgtatgg 515  Q
    ||||||||||| || |||||||||||||||||||||||    
T  25298014 aaaacttaggtacaattccttaggtgtttttcgtatgg 25297977  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 515
Target Start/End: Complemental strand, 47940738 - 47940701
Alignment:
Q  478 aaaacttaggtgcatttccttaggtgtttttcgtatgg 515  Q
    ||||||||||| || |||||||||||||||||||||||    
T  47940738 aaaacttaggtacaattccttaggtgtttttcgtatgg 47940701  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 515
Target Start/End: Original strand, 13886538 - 13886575
Alignment:
Q  478 aaaacttaggtgcatttccttaggtgtttttcgtatgg 515  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  13886538 aaaacttaggttcatttccttaggtgtttttcatatgg 13886575  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 515
Target Start/End: Complemental strand, 33390813 - 33390776
Alignment:
Q  478 aaaacttaggtgcatttccttaggtgtttttcgtatgg 515  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  33390813 aaaacttaggtgcatttccttaggtgcttttcatatgg 33390776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 515
Target Start/End: Complemental strand, 38629641 - 38629604
Alignment:
Q  478 aaaacttaggtgcatttccttaggtgtttttcgtatgg 515  Q
    ||||||||||| || |||||||||||||||||||||||    
T  38629641 aaaacttaggtacaattccttaggtgtttttcgtatgg 38629604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 515
Target Start/End: Complemental strand, 3422600 - 3422559
Alignment:
Q  474 ggacaaaacttaggtgcatttccttaggtgtttttcgtatgg 515  Q
    ||||||||||||||| || ||| |||||||||||||||||||    
T  3422600 ggacaaaacttaggtacaattctttaggtgtttttcgtatgg 3422559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 515
Target Start/End: Complemental strand, 42274660 - 42274623
Alignment:
Q  478 aaaacttaggtgcatttccttaggtgtttttcgtatgg 515  Q
    ||||||||||| || |||||||||||||||||||||||    
T  42274660 aaaacttaggtacaattccttaggtgtttttcgtatgg 42274623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 515
Target Start/End: Complemental strand, 1924148 - 1924111
Alignment:
Q  478 aaaacttaggtgcatttccttaggtgtttttcgtatgg 515  Q
    ||||||||||| || |||||||||||||||||||||||    
T  1924148 aaaacttaggtacaattccttaggtgtttttcgtatgg 1924111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 514
Target Start/End: Complemental strand, 10553048 - 10553012
Alignment:
Q  478 aaaacttaggtgcatttccttaggtgtttttcgtatg 514  Q
    ||||||||||| || ||||||||||||||||||||||    
T  10553048 aaaacttaggtacaattccttaggtgtttttcgtatg 10553012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 514
Target Start/End: Original strand, 22269726 - 22269762
Alignment:
Q  478 aaaacttaggtgcatttccttaggtgtttttcgtatg 514  Q
    ||||||||||| || ||||||||||||||||||||||    
T  22269726 aaaacttaggtacaattccttaggtgtttttcgtatg 22269762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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