View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20340_low_36 (Length: 250)
Name: NF20340_low_36
Description: NF20340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20340_low_36 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 30 - 243
Target Start/End: Original strand, 44817699 - 44817932
Alignment:
| Q |
30 |
agatagataggatagagaccttacttgttccttataannnnnnnnnnnnn-gactcaatgtctcattgaattataagataaataaatgttgtaacattta |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44817699 |
agatagataggatagagaccttacttgttccttataattttttttctttttgactcaatgtctcattgaattataagataaataaatgttgtaacattta |
44817798 |
T |
|
| Q |
129 |
aacttttaatgttgaatataata-------------------acatcaatataaaccaactaataaagtttatagaaacattacggtaagtatggaccgg |
209 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44817799 |
aaattttaatgttgaatataatatcctctagttttaaatgaaacatcaatataaatcaactaataaagtttatagaaacattacggtaagcatggaccgg |
44817898 |
T |
|
| Q |
210 |
gatttgaacatgcattctccaactattcttctca |
243 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||| |
|
|
| T |
44817899 |
gatttgaacatgcattctccaattattcatctca |
44817932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 44817658 - 44817696
Alignment:
| Q |
1 |
caaacctaaccatgtgccttttatggggaagatagatag |
39 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44817658 |
caaacctaaccatgtgccttttatggggaagatagatag |
44817696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University