View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20340_low_4 (Length: 542)
Name: NF20340_low_4
Description: NF20340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20340_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 10 - 316
Target Start/End: Complemental strand, 39681793 - 39681491
Alignment:
| Q |
10 |
ataatactaacaaatttgacgagttagagacttttctaaaatattcataatcagctggacctatttgtccttcaaattaagttaaggcagtttactcaat |
109 |
Q |
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| T |
39681793 |
ataatactaacaaatttgacgagttagagacttttctaaaatattcataatcagctggacctatttgtccttcaaattaagttaaggcagtttactcaat |
39681694 |
T |
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| Q |
110 |
tttcttcttgcatgaaccataggtaatttctcttcttcttgaactgttgtgttgaacatataagttgttagagaacaaaatggtgaactcacactcagca |
209 |
Q |
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| T |
39681693 |
tttcttcttgcatgaaccataggtaatttctcttcttcttgaactgttgtgttgaacatataagttgttagagaacaaaatggtgaactcacactcagca |
39681594 |
T |
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| Q |
210 |
aaacaaaagaaagagtgtatcaaagaattgcagaatattgcacttgttttagtttcacacaagtaaactcacttctgactcaatcaactaactacaatac |
309 |
Q |
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| T |
39681593 |
aaacaaaagaaagagtgtatcaaagaattgtagaatattgcacttgttttagtttcatacaagtaaactcacttctgac----tcaactaactacaatac |
39681498 |
T |
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| Q |
310 |
taataga |
316 |
Q |
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| T |
39681497 |
taataga |
39681491 |
T |
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