View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20340_low_5 (Length: 484)
Name: NF20340_low_5
Description: NF20340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20340_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 18 - 474
Target Start/End: Complemental strand, 6292565 - 6292109
Alignment:
| Q |
18 |
tgaggttggtccaggtttcaaatcttcattaaacaatgcaaacaagtaaacttccaacctcattctaggattcaaaggtgtcccttgattcgccatttgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6292565 |
tgaggttggtccaggtttcaaatcttcattaaacaatgcaaacaagtaaacttccaacctcattctaggattcaaaggtgtcccttgattcgccatttgt |
6292466 |
T |
|
| Q |
118 |
ctcttcaacaagtttctattataagttgcagcattttgcggagaagcaccaacctcattcgggtcgcctctagaaggccaacctgtctcggataccctaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6292465 |
ctcttcaacaagtttctattataagttgcagcattttgcggagaagcaccaacctcattcgggtcgcctctagaaggccaacccgtctcggataccctaa |
6292366 |
T |
|
| Q |
218 |
cttcaatccctttaaatcccattttagctatggaaaatgatacagcatcagccatagcataaagcatgttatcataatgtagatttgtggtaggatcaac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6292365 |
cttcaatccctttaaatcccattttagctatggaaaatgatacagcatcagccatagcataaagcatgttatcataatgtagatttgtggtaggatcaac |
6292266 |
T |
|
| Q |
318 |
cattccttgactaggattaaataaaacatagtccaaaggaattgaatctggatcatctttatatgcaaagtaagggtaagcattgatccaaaaaggtgct |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6292265 |
cattccttgactaggattaaataaaacatagtccaaaggaattgaatctggatcatctttatatgcaaagtaagggtaagcattgatccaaaaaggtgct |
6292166 |
T |
|
| Q |
418 |
tttgttgtttgcaagaagttcaaaaattggtacatcatgctagagatttcgcctttg |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6292165 |
tttgttgtttgcaagaagttcaaaaattggtacatcatgctagagatttcgcctttg |
6292109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 206
Target Start/End: Complemental strand, 36381911 - 36381823
Alignment:
| Q |
118 |
ctcttcaacaagtttctattataagttgcagcattttgcggagaagcaccaacctcattcgggtcgcctctagaaggccaacctgtctc |
206 |
Q |
| |
|
||||||||||| || |||| |||| || | ||||| || | ||||| |||||||||| ||| || ||| ||||||||||||||||||| |
|
|
| T |
36381911 |
ctcttcaacaaattactatgataaatttctgcattctgtagtgaagctccaacctcatccggatcacctttagaaggccaacctgtctc |
36381823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 32856261 - 32856688
Alignment:
| Q |
18 |
tgaggttggtccaggtttcaaatcttcattaaacaatgcaaacaagtaaacttccaacctcattctaggattcaaaggtgtcccttgattcgccatttgt |
117 |
Q |
| |
|
||||||||||||| |||| || ||||||||| ||||||||||| || |||||| |||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
32856261 |
tgaggttggtccattcttcatattttcattaaataatgcaaacaaatatgattccaatctcattctaggattcaaaggtgtcccttcattcttcatttgt |
32856360 |
T |
|
| Q |
118 |
ctcttcaacaagtttctattataagttgcagcattttgcggagaagcaccaacctcattcgggtcgcctctagaaggccaacctgtctcggataccctaa |
217 |
Q |
| |
|
||| |||| || || | |||||| || ||||||||| | || ||||||| |||| | ||| ||| || |||||||| ||||| || ||||||| |
|
|
| T |
32856361 |
ctcctcaataaattcttgttataaatttcagcatttttcaatgatgcaccaatttcatcagagtcacctttacttggccaaccagtctcagaaaccctaa |
32856460 |
T |
|
| Q |
218 |
cttcaatccctttaaatcccattttagctatggaaaatgatacagcatcagccatagcataaagcatgttatcataatgtagatttgtggtaggatcaac |
317 |
Q |
| |
|
|||| ||||| ||||| || | |||||| || | ||||| |||||||| |||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
32856461 |
cttctatcccattaaaacctaatttagcaattgcaaatgtaacagcatctaccatagcataaagcatgttatcataatgtaaatttgtattaggatcaac |
32856560 |
T |
|
| Q |
318 |
cattccttgactaggattaaataaaacatagtccaaaggaattgaatctggatcatctttatatgcaaagtaagggtaagcattgatccaaaaaggtgct |
417 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| |||| ||| || || |||| ||||| ||||| ||||| |||||||||| |||||| |||| | |
|
|
| T |
32856561 |
cattccttggttaggattaaataatacatagtctaaagatatttgattagggtcattcttataagcaaaataaggataagcattgacccaaaagggtgat |
32856660 |
T |
|
| Q |
418 |
tttgttgtttgcaagaagttcaaaaatt |
445 |
Q |
| |
|
|||||| || ||| ||||||||||||| |
|
|
| T |
32856661 |
tttgtttttgacaaaaagttcaaaaatt |
32856688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University