View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20340_low_8 (Length: 435)
Name: NF20340_low_8
Description: NF20340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20340_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 422
Target Start/End: Original strand, 35378333 - 35378735
Alignment:
| Q |
18 |
ggttgagcatgagcaaaatcaaaggccacaaacaaatttgttatcaacattaaacaactaaaactaaacactaaagaacttgtcatagctaagtatgaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35378333 |
ggttgagcatgagcaaaatcaaaggccacaaacaaatttgttatcaacattaaacaactaaaactaaacactaaagaacttgtcatagctaagtatgaat |
35378432 |
T |
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| Q |
118 |
aagtgaagtgaaacttgtgtgctatatgttatggtgagtaagtgatagtttggaaaatgtaatgtcnnnnnnnnnnnnnnnnnnnnnnaattgaaagacc |
217 |
Q |
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| T |
35378433 |
aagtgaagtgaaacttgtgtgctatatgttatggtgagtaagtgatagtttggaaaatgtaatgtctatatatatacatatatata--aattgaaagacc |
35378530 |
T |
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| Q |
218 |
actcactacaagtctacaacattttaccgcattcataaatgtcatattgattcttctaccatcttccaagtttaaatcaatcgccaaatcaagtaacaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35378531 |
actcactacaagtctacaacattttaccgcattcataaatgtcatattgattcttctaccatcttccaagtttaaatcaatcgccaaatcaagtaacaaa |
35378630 |
T |
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| Q |
318 |
gtaattgctcaagttccttgtttcagcaaatttgtcacattttccttagattccaagatgatataatccttcgtattaaaggagcagaacattgggggtc |
417 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35378631 |
gtaattgctcaagttccttgtttcagcaaatgtgtcacattttccttagattccaagatgatataatccttcgtattaaaggagcagaacattgggggtc |
35378730 |
T |
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| Q |
418 |
tgtgc |
422 |
Q |
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| T |
35378731 |
tgtgc |
35378735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 35372686 - 35372743
Alignment:
| Q |
18 |
ggttgagcatgagcaaaatcaaaggccacaaacaaatttgttatcaacattaaacaac |
75 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
35372686 |
ggttgagcatgagcaaaatcaaaggccataaacaaatttgttatcactattaaacaac |
35372743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 325
Target Start/End: Original strand, 35359581 - 35359658
Alignment:
| Q |
247 |
cattcataaatgtcatattgattcttctaccatcttccaagtttaaatcaatcgccaaatcaagtaacaaagtaattgc |
325 |
Q |
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||||||||||||| | |||| | |||||||| |||||||||||||| |||| ||| |||||||||||||| ||||||| |
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| T |
35359581 |
cattcataaatgttttcttgaattttctaccaccttccaagtttaaagcaat-gccgaatcaagtaacaaaataattgc |
35359658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 28849798 - 28849635
Alignment:
| Q |
18 |
ggttgagcatgagcaaaatcaaaggccacaaacaaatttgttatcaacattaaacaactaaaactaaacactaaagaacttgtcatagctaagta--tga |
115 |
Q |
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|||| ||||| |||||||| |||| ||||||||||||||||||||| |||||||||| | ||||||||| |||||| ||||| |||||||| || |
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| T |
28849798 |
ggttaagcataagcaaaatgaaagtccacaaacaaatttgttatcattattaaacaac---atctaaacactttagaactagtcatggctaagtacgaga |
28849702 |
T |
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| Q |
116 |
ataagtgaagtgaaacttgt-gtgctatatgttatggtgagtaagtgatagtttggaaaatgtaatgt |
182 |
Q |
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||||||||| |||||||| | |||||||||||| |||||||||| ||||||||| |||||||| |||| |
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| T |
28849701 |
ataagtgaactgaaacttttcgtgctatatgttgtggtgagtaactgatagttt-gaaaatgttatgt |
28849635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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