View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20341_high_13 (Length: 333)
Name: NF20341_high_13
Description: NF20341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20341_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 9 - 317
Target Start/End: Complemental strand, 24155157 - 24154849
Alignment:
| Q |
9 |
agcagagaaggtacagcattaacaaacttgttttatatatatacctaagatactaaatttagctcaacattaatgttggtcatcatgttcaacatgacta |
108 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24155157 |
agcaaagaaggtacatcattaacaaacttgttttatatatatacctaagatactaaatttagctcaacattaatgttggtcatcatgttcaacatgacta |
24155058 |
T |
|
| Q |
109 |
gcaacatagctgttatcattagtatcttaatctccctcatactctattcatcatctatagttgcttattgcagattacttgatagactctatcttccatc |
208 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24155057 |
gcaacatagctgttatcattggtatcttaatctccctcatactctattcatcatctatagttgcttattgcagattacttgatagactctatcttccatc |
24154958 |
T |
|
| Q |
209 |
accactaacaggtcctgaatccttagcatttaactccattggtgaaggaccttatactggtgtttctgatggaagaattcttaaatatgatgaagaatgt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24154957 |
accactaacaggtcctgaatccttagcatttaactccattggtgaaggaccttatacaggtgtatctgatggaagaattcttaaatatgatgaagaatgt |
24154858 |
T |
|
| Q |
309 |
tcttgtttc |
317 |
Q |
| |
|
||||||||| |
|
|
| T |
24154857 |
tcttgtttc |
24154849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 90 - 317
Target Start/End: Complemental strand, 24143757 - 24143527
Alignment:
| Q |
90 |
atcatgttcaacatgactagcaacatagctgttatcattagtatcttaatctccctcatactctat---tcatcatctatagttgcttattgcagattac |
186 |
Q |
| |
|
|||| ||| |||||| |||||||||| |||||||||| | | |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| |
|
|
| T |
24143757 |
atcaagttaaacatgtctagcaacatggctgttatcactgggatcttaatctccctcatactctataattcatcatctatagttgcctattgcaaattac |
24143658 |
T |
|
| Q |
187 |
ttgatagactctatcttccatcaccactaacaggtcctgaatccttagcatttaactccattggtgaaggaccttatactggtgtttctgatggaagaat |
286 |
Q |
| |
|
| || ||||||||||||||| || |||||||||| || || ||| |||||||| | |||||||||| ||| |||||||||||||| |||||||||||||| |
|
|
| T |
24143657 |
tggacagactctatcttccaccatcactaacaggccccgagtccctagcatttgattccattggtggagggccttatactggtgtatctgatggaagaat |
24143558 |
T |
|
| Q |
287 |
tcttaaatatgatgaagaatgttcttgtttc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
24143557 |
tcttaaatatgatgaagaatgttcttgtttc |
24143527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University