View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20341_high_14 (Length: 328)
Name: NF20341_high_14
Description: NF20341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20341_high_14 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 438817 - 439107
Alignment:
| Q |
18 |
agagcaaacccatcttgagcacgcatgccaaagaagaaagtggcaaacaaagtgcttaaaatctttggaacacacaacaagagtataatgataagtgtat |
117 |
Q |
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| T |
438817 |
agagcaaaaccatcttgagcacgcatgccaaagaagaaagtggcaaacaaagtgcttaaaatctttggaacacacaacaagagtataatgataagtgtat |
438916 |
T |
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| Q |
118 |
aggcacaatttggctgaaagaaaatggttttcaccatgagttttgatccattgccacaaaagtagatcggtgcaagaaacccaataccaaaatcattagt |
217 |
Q |
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| T |
438917 |
aggcacaatttggctgaaagaaaatggttttcaccatgagttttgatccattgccacaaaagtagatcggtgcaagaaagccaataccaaaatcattagt |
439016 |
T |
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| Q |
218 |
catcgacacgaccatgtcagcaaatttaccgtgaggtaaaatcaacccgtataaaaaagccccaacaacatcatgtgtgccaagagtatcg |
308 |
Q |
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| T |
439017 |
cattgacacgaccatgtcagcaaatttaccgtgaggtaaaatcaacccgtataaaaaagccccaacaacatcatgtgtgccaagagtatcg |
439107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 20 - 307
Target Start/End: Complemental strand, 28608084 - 28607797
Alignment:
| Q |
20 |
agcaaacccatcttgagcacgcatgccaaagaagaaagtggcaaacaaagtgcttaaaatctttggaacacacaacaagagtataatgataagtgtatag |
119 |
Q |
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| T |
28608084 |
agcaaaaccatctcgagtacgcatgccaaacaagaaagtggaaaacaaagtgcttagaatctttagaacacacatcaagagtataatgataagtgtaaag |
28607985 |
T |
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| Q |
120 |
gcacaatttggctgaaagaaaatggttttcaccatgagttttgatccattgccacaaaagtagatcggtgcaagaaacccaataccaaaatcattagtca |
219 |
Q |
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| T |
28607984 |
ggccaacttggttgatagaaaacgggcacgaacatgagtttcaatccactgccaataaagtaaattggtgctagaaacccaccaccaaaatcattagtca |
28607885 |
T |
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| Q |
220 |
tcgacacgaccatgtcagcaaatttaccgtgaggtaaaatcaacccgtataaaaaagccccaacaacatcatgtgtgccaagagtatc |
307 |
Q |
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| T |
28607884 |
ttgatgtgaccatgtcagcaaatttaccgtgaggtaaaatcaacccgtatacaaatgcaccaacaacgtcatgtgtaccaagaatatc |
28607797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 7589522 - 7589594
Alignment:
| Q |
44 |
gccaaagaagaaagtggcaaacaaagtgcttaaaatctttggaacacacaacaagagtataatgataagtgta |
116 |
Q |
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| T |
7589522 |
gccaaaaaagaaactggcaaacaaagtgtttagaatcttttgaacatgcaataagactataataataaatgta |
7589594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 302
Target Start/End: Complemental strand, 13651963 - 13651691
Alignment:
| Q |
30 |
tcttgagcacgcatgccaaagaagaaagtggcaaacaaagtgcttaaaatctttggaacacacaacaagagtataatgataagtgtataggcacaatttg |
129 |
Q |
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| T |
13651963 |
tcttgagtacgcatgccaaaaaataaagtggtaaacaaagtgcttaaaatctttggaacacataacaagattataagcacaagtgttaagggccagtttc |
13651864 |
T |
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| Q |
130 |
gctgaaagaaaatggttttcaccatgagttttgatccattgccacaaaagtagatcggtgcaagaaacccaataccaaaatcattagtcatcgacacgac |
229 |
Q |
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| T |
13651863 |
gatggacgaatatggctttcacaatgaagcgcattccattgcgactaaagaagagcggggccagaaactcgccaccaaagtcatcagtcattgacgtgac |
13651764 |
T |
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| Q |
230 |
catgtcagcaaatttaccgtgaggtaaaatcaacccgtataaaaaagccccaacaacatcatgtgtgccaaga |
302 |
Q |
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| T |
13651763 |
catatcagcaaatttaccatgaggcaaaatcaacccgtacacaaaagctccgacaatatcttgtgtgccaaga |
13651691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 13659449 - 13659364
Alignment:
| Q |
30 |
tcttgagcacgcatgccaaagaagaaagtggcaaacaaagtgcttaaaatctttggaacacacaacaagagtataatgataagtgt |
115 |
Q |
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| T |
13659449 |
tcttgagtacgcataccaaaaaagaaagtagcaaacaaagtgcttaaaatcttcggaacacataacaagattataataacaagtgt |
13659364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 307
Target Start/End: Complemental strand, 13659245 - 13659172
Alignment:
| Q |
234 |
tcagcaaatttaccgtgaggtaaaatcaacccgtataaaaaagccccaacaacatcatgtgtgccaagagtatc |
307 |
Q |
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| T |
13659245 |
tcagcaaatttaccgtgaggtaaaatcaacccgtacacaaaagccccaacaatgtcttgtgttccaagaatatc |
13659172 |
T |
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