View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20341_high_17 (Length: 308)

Name: NF20341_high_17
Description: NF20341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20341_high_17
NF20341_high_17
[»] chr7 (1 HSPs)
chr7 (1-295)||(32861052-32861348)


Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 32861052 - 32861348
Alignment:
Q  1 tttgagatccatttctttgaagctgtttgtattctttattgttagtaacactgttttgatttctccatggaagtgatttgagctcgcacaaggaaaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32861052 tttgagatccatttctttgaagctgtttgtattctttattgttagtaacactgttttgatttcttcatggaagtgatttgagctcgcacaaggaaaatag 32861151  T
Q  101 ttagaaattgcacaagctcttaaaccttctttggtgaaccacgaggctcatttttctgaagaaaagaaaaatctgatccagctttggtaagttctttggt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  32861152 ttagaaattgcacaagctcttaaaccttctttggtgaaccacgaggctcatttttctgaaaaaaagaaaaatctgatccagctttggtaaattctttggt 32861251  T
Q  201 gaacctctaagcttttgaaattacaaaatatttagagt--cacgtaggcagtatttaccaatgatttcgtttcaaattagttttaaagttattcttg 295  Q
    ||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32861252 gaacctctaagctttcgaaattacaaaatatttagagtcacacgtaggcagtatttaccaatgatttcgtttcaaattagttttaaagttattcttg 32861348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University