View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20341_high_2 (Length: 543)
Name: NF20341_high_2
Description: NF20341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20341_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 61 - 532
Target Start/End: Original strand, 39100046 - 39100507
Alignment:
| Q |
61 |
aaaggaggtcagctctaactattgttgttatcatttatatttatcaataagtataaatatactctatnnnnnnnnnnnnnnnnnttatttctttgattga |
160 |
Q |
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| T |
39100046 |
aaaggaggtcatctctaactattgttgttatcatttatatttatcaacaagtataaatatactctatacacaca----------ttatttctttgattga |
39100135 |
T |
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| Q |
161 |
aagccttcttcatacatttgttgctgctcttcttttattgcattaattattacattacataaacgacatatacacatacaaacacaattaacttcatgtt |
260 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
39100136 |
aagccttcttcatacatttgttgctgctcttcttttactgcattaattattacattacataaacgacatatacacatacaaaaaaaattaacttcatgtt |
39100235 |
T |
|
| Q |
261 |
gacgacggtagaacaaacttggttaggattgaaaccaatattttctgagttatgcataactccaagcagaaacaaggtcaataacgtttcaaccgaaaca |
360 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39100236 |
gacgacggtagaacaaacttggttagcattgaaaccaatattttctgagttatgcataactccaagcagaaacaaggtcaataacgtttcaaccgaaaca |
39100335 |
T |
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| Q |
361 |
tctcctcctgatttttgcaatattcactcagattctttcgaggatttggtcgagataggcataagcctgccatgtaatgaatcagtggaagaaaaactat |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39100336 |
tctcctcctgatttttgcaatattcactcagattctttcgaggatttggtcgagataggcataagcctgccatgtaatgaatcagtggaagaaaaactat |
39100435 |
T |
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| Q |
461 |
gctggttgagatcacaaatcattggtaatgatgtagaattcaactctccttttggtacaagaaaacttgtct |
532 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39100436 |
gctggttgagatcacaaatcattggtaatgatgtagaattcaactctccttttggtactagaaaacttgtct |
39100507 |
T |
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