View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20341_high_20 (Length: 301)
Name: NF20341_high_20
Description: NF20341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20341_high_20 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 291
Target Start/End: Original strand, 1966811 - 1967087
Alignment:
| Q |
15 |
catctctagcatgacatgtgtatgtatgaattttgtggaaattttggagtcaatgactttaatattgatacttttgtatagagtttggaagagtgatcaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
1966811 |
catctctagcatgacatgtgtatgtatgaattttgtggaaattttggagtcaatgactttaatattaatacttttgtatagagtttggaatagtgatcaa |
1966910 |
T |
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| Q |
115 |
aatatagacggtagatataattggtttgatttatcaaaattgaaatatatagccaatatattttcaaaggttgatagttatcgcttgtgtttatggtgta |
214 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1966911 |
aatatagacggtagataaaattggtttgatttatcaaaattgaaatatataaccaatgtatttttaaaggttgatagttatcgcttgtgtttatggtgta |
1967010 |
T |
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| Q |
215 |
ttcctgtgcaactcttttgtagttgagaaatatatatgctaccatgtttttagatgttgtgacaatgatagtctctg |
291 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
1967011 |
ttcctgtgcaactcatttgtagttgagaaatatatatgctaccatgtttttagatgttgcgacaatgatagtttctg |
1967087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 15 - 291
Target Start/End: Complemental strand, 8991061 - 8990785
Alignment:
| Q |
15 |
catctctagcatgacatgtgtatgtatgaattttgtggaaattttggagtcaatgactttaatattgatacttttgtatagagtttggaagagtgatcaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
8991061 |
catctctagcatgacatgtgtatgtatgaattttgtggaaattttggagtcagtgactttaatattaatacttttgtatagagtttggaatagtgatcaa |
8990962 |
T |
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| Q |
115 |
aatatagacggtagatataattggtttgatttatcaaaattgaaatatatagccaatatattttcaaaggttgatagttatcgcttgtgtttatggtgta |
214 |
Q |
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| T |
8990961 |
aatatagacggtagataaaattggtttgatttatcaaaattgaaatatatagtcaatgtattttcaaaggttgatagttatcgcttgtgtttatggtgta |
8990862 |
T |
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| Q |
215 |
ttcctgtgcaactcttttgtagttgagaaatatatatgctaccatgtttttagatgttgtgacaatgatagtctctg |
291 |
Q |
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| T |
8990861 |
ttcttgagcaactcatttgtagttgagaaatacatatgctaccatgtttttagatgttgtgacaatgatactctctg |
8990785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 133 - 291
Target Start/End: Complemental strand, 6951749 - 6951591
Alignment:
| Q |
133 |
aattggtttgatttatcaaaattgaaatatatagccaatatattttcaaaggttgatagttatcgcttgtgtttatggtgtattcctgtgcaactctttt |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6951749 |
aattggtttgatttatcaaaattgaaatatatagccaatgtattttcaaaggttgatagttatcgcttgtgtttatggtgtattcctgtgcaactcattt |
6951650 |
T |
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| Q |
233 |
gtagttgagaaatatatatgctaccatgtttttagatgttgtgacaatgatagtctctg |
291 |
Q |
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| T |
6951649 |
gtagttgagaaatatatatgctaccatgtttttagatgttgtgacaatgatagtttctg |
6951591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 244 - 286
Target Start/End: Complemental strand, 6951810 - 6951768
Alignment:
| Q |
244 |
atatatatgctaccatgtttttagatgttgtgacaatgatagt |
286 |
Q |
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| T |
6951810 |
atatatatgctaccatgtttttagatgatgtgacaatgatagt |
6951768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 31181669 - 31181808
Alignment:
| Q |
15 |
catctctagcatgacatgtgtatgtatgaattttgtggaaattttggagtcaatgactttaatattgatacttttgtatagagtttggaagagtgatcaa |
114 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||| | |||||||||| |||||||| |
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| T |
31181669 |
catctctagcatgatatgtgtatgtatgaattttgtggaaattttggagtcaatgacctttatattaatacttttgtcttgagtttggaatagtgatcag |
31181768 |
T |
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| Q |
115 |
aatatagacggtagatataattggtttgatttatcaaaat |
154 |
Q |
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| T |
31181769 |
aatatagacatcagataaaattggtttggtttgtcaaaat |
31181808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 111179 - 111249
Alignment:
| Q |
84 |
acttttgtatagagtttggaagagtgatcaaaatatagacggtagatataattggtttgatttatcaaaat |
154 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| ||||||| |
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| T |
111179 |
acttttgcatagagtttggaatagtgatcaaaatatagacggtagataaaattggtttggtttgtcaaaat |
111249 |
T |
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