View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20341_high_29 (Length: 228)
Name: NF20341_high_29
Description: NF20341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20341_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 28896672 - 28896480
Alignment:
| Q |
14 |
caatttcaacgggtaacacatcatatttatttgcaatccagaacagctgaaaatatcataatcaattaaccctttttccctccatgttaaatccttcttt |
113 |
Q |
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| T |
28896672 |
caatttcaacgggtaacacatcatattt----gcaatccagaacagctgaaaatatcataatcaattaaacctttttccctccatgttaaatccttcttt |
28896577 |
T |
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| Q |
114 |
agccaaatatataccagaaaatgcattgacgaagacaggtgagttaaagcttcacttgtgattaatatgaagtatattgccaaacctcacaattaga |
210 |
Q |
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| T |
28896576 |
agccaaatatataccagaaaatgcattgacgaagacaggtgagttaaagcttcacttgtgattaatatgaagtatattgccaaacctcacaattaga |
28896480 |
T |
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