View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20341_high_30 (Length: 227)
Name: NF20341_high_30
Description: NF20341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20341_high_30 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 2820600 - 2820380
Alignment:
| Q |
7 |
tatgcttattggaaaggaaatccgtatactgccgcaacacgactagacttcctcaattgtaatgtttcaaccgcacaggattggaatcttcgtttattta |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2820600 |
tatgcttattggaaaggaaatccgtatactgccgcaacacgactagacttcctcaattgtaatgtttcaaccgcacaggattggaatcttcgtttattta |
2820501 |
T |
|
| Q |
107 |
cgcaggtacagacatatctaaaggctttctgataagttataacacatatcagtatacaaaatgatgatatttcgtcacaaatatgtaggattggattaaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2820500 |
cgcaggtacagacatatctaaaggctttctgataagttataacacatatcagtatacaaaatgatgatattttgtcacaaatatgtaggattggattaaa |
2820401 |
T |
|
| Q |
207 |
gagtctgaacaaggattcaat |
227 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
2820400 |
gagtctgaacaaggattcaat |
2820380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University