View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20341_high_33 (Length: 220)
Name: NF20341_high_33
Description: NF20341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20341_high_33 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 20270703 - 20270500
Alignment:
| Q |
17 |
atagaaaaagaagaaggaacctgttgaggccttgtggtagaagaagctaaacgagtgatagagatggaactagtattagaagccaaaatagcagaagact |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20270703 |
atagaaaaagaagaaggaacctgttgaggccttgtggtagaagaagctaaacgagtgatagagatggaactagtattagaagccaaaatagcagaagact |
20270604 |
T |
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| Q |
117 |
tagcaatcttatctaattgaacaaacaaagatttcttaacctcttcagattcaacaatagcttcaataataaaatcagcaacagagaggtcatttaaatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20270603 |
tagcaatcttatctaattgaacaaacaaagatttcttaacctcttcagattcaacaatagcttcaataataaaatcagcaacagagaggtcatttaaatt |
20270504 |
T |
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| Q |
217 |
agtt |
220 |
Q |
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|||| |
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| T |
20270503 |
agtt |
20270500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 21057332 - 21057129
Alignment:
| Q |
17 |
atagaaaaagaagaaggaacctgttgaggccttgtggtagaagaagctaaacgagtgatagagatggaactagtattagaagccaaaatagcagaagact |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21057332 |
atagaaaaagaagaaggaacctgttgaggccttgtggtagaagaagctaaacgagtgatagagatggaactagtattagaagccaaaatagcagaagact |
21057233 |
T |
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| Q |
117 |
tagcaatcttatctaattgaacaaacaaagatttcttaacctcttcagattcaacaatagcttcaataataaaatcagcaacagagaggtcatttaaatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21057232 |
tagcaatcttatctaattgaacaaacaaagatttcttaacctcttcagattcaacaatagcttcaataataaaatcagcaacagagaggtcatttaaatt |
21057133 |
T |
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| Q |
217 |
agtt |
220 |
Q |
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|||| |
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| T |
21057132 |
agtt |
21057129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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