View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20341_low_10 (Length: 421)
Name: NF20341_low_10
Description: NF20341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20341_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 157 - 404
Target Start/End: Original strand, 26438997 - 26439237
Alignment:
| Q |
157 |
atagcaaaaccttattcaaatgagggttttaaagagaagaagaagagagtgaaaaatttcatttcaggtatagaattataatttatagataaccgtgaaa |
256 |
Q |
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| T |
26438997 |
atagcaaaaccttattcaaatgagggttttaaagagaagaaaaagagagtgaaaaatttcatttcaggtatagaattata-------gatagccgtgaaa |
26439089 |
T |
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| Q |
257 |
tgcaatgtccttgctcttatgtagtttcatactcattagtatacttattattcaaaagaaacatttaaccgccaattccatttttacccaaaacacttca |
356 |
Q |
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| T |
26439090 |
tgtaatgtccttgctcttatgtagtttcatattcattagtatacttcttattcaaaagaaacatttaaccgccaattccatttttccccaaaacacttca |
26439189 |
T |
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| Q |
357 |
tccaaacattccataagttnnnnnnnnngtataaccttaatagaattt |
404 |
Q |
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| T |
26439190 |
tccaaacattccataagttaaaaaaaaagtataaccttaatagaattt |
26439237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 26438749 - 26438899
Alignment:
| Q |
9 |
attattctgtgaaactagtgcgcatgtaagctatttcaaatgtaattctcacataaaaattaaacatagagtgtagtaacattctcataaaatgtcaaca |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26438749 |
attattctgtgaaactagtgcgcatgtaagctatttcaaatgtaattctcacataaaaattaaacatagagtgtagtgacattctcataaaatgtcaaca |
26438848 |
T |
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| Q |
109 |
tatcagtctgcatgagcatagctcaagttggtagggacatcacattctata |
159 |
Q |
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| T |
26438849 |
tatcagtctgcgtgagcatagctcaagttggtagggacatcacattctata |
26438899 |
T |
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