View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20341_low_13 (Length: 359)
Name: NF20341_low_13
Description: NF20341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20341_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 28896672 - 28896430
Alignment:
| Q |
14 |
caatttcaacgggtaacacatcatatttatttgcaatccagaacagctgaaaatatcataatcaattaaccctttttccctccatgttaaatccttcttt |
113 |
Q |
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| T |
28896672 |
caatttcaacgggtaacacatcatattt----gcaatccagaacagctgaaaatatcataatcaattaaacctttttccctccatgttaaatccttcttt |
28896577 |
T |
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| Q |
114 |
agccaaatatataccagaaaatgcattgacgaagacaggtgagttaaagcttcacttgtgattaatatgaagtatattgccaaacctcacaattagagat |
213 |
Q |
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| T |
28896576 |
agccaaatatataccagaaaatgcattgacgaagacaggtgagttaaagcttcacttgtgattaatatgaagtatattgccaaacctcacaattagagat |
28896477 |
T |
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| Q |
214 |
atatgcccactgaaattaaatattcatgcaattgagtgttttatttt |
260 |
Q |
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|||| |||||||||||| |||||||||||||||||||||| |||||| |
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| T |
28896476 |
atatacccactgaaattgaatattcatgcaattgagtgttctatttt |
28896430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 259 - 359
Target Start/End: Complemental strand, 28896383 - 28896282
Alignment:
| Q |
259 |
ttaagttcaacaattgttgtataaaggaaataattagttattttctattttaaaattatttcaa-tttaaagagaataataaaataagtattatctaccc |
357 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||| |
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| T |
28896383 |
ttaagttcaacaattgttgtataaaggaaataatcagttattttctattttaaaattatttcaattttaaagagaataataaaataagtattaacaaccc |
28896284 |
T |
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| Q |
358 |
ac |
359 |
Q |
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|| |
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| T |
28896283 |
ac |
28896282 |
T |
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