View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20341_low_16 (Length: 314)
Name: NF20341_low_16
Description: NF20341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20341_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 298
Target Start/End: Complemental strand, 1966816 - 1966524
Alignment:
| Q |
8 |
gagatgaaattatgctattgtttttctatatggacacaacaagcactgataaacaacacataactattcaaatagagtaagctaatttgattcacacaaa |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1966816 |
gagatgaaattatgctattgtttttctatatggacacaacaagcactgataaacaacacataactattcaaatagagtaagttaatttgattcacacaaa |
1966717 |
T |
|
| Q |
108 |
tgagaactatcagtgtctaccatgctctaaaacaaaaatcacatgataagtccataaactagtaaaatctcatggaaccaatattatctaactgaattat |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1966716 |
tgagaactatcagtgtctaccatgctctaaaacaaaaatcacatgataagtccataaactagtaaaatctcattgaaccaatattatctaactgaattat |
1966617 |
T |
|
| Q |
208 |
gagtaactaatttagtggcataaaaatgggctagagaaa--tgagattgaaacaacaagcagtggcactcagtagaaaattagaccaacatgc |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1966616 |
gagtaactaatttagtggcataaaaatgggctagagaaatgtgaggttgaaacaacaagcagtggcacttagtagaaaattagaccaacatgc |
1966524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 8 - 298
Target Start/End: Original strand, 8991056 - 8991348
Alignment:
| Q |
8 |
gagatgaaattatgctattgtttttctatatggacacaacaagcactgataaacaacacataactattcaaatagagtaagctaatttgattcacacaaa |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
8991056 |
gagatgaaattatgctattgtttttctatatggacacaacaagcactaataaacaacacatagctattcaaatagagtaagttaatttgattcacacaaa |
8991155 |
T |
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| Q |
108 |
tgagaactatcagtgtctaccatgctctaaaacaaaaatcacatgataagtccataaactagtaaaatctcatggaaccaatattatctaactgaattat |
207 |
Q |
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| T |
8991156 |
tgagaactatcagcgtctaccatgctctaaaacaaaaatcacatgataaatccataaactagtaaaatctcattgaaccaatattatctaactgaattat |
8991255 |
T |
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| Q |
208 |
gagtaactaatttagtggcataaaaatgggctagagaaa--tgagattgaaacaacaagcagtggcactcagtagaaaattagaccaacatgc |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8991256 |
gagtaactaatttagtggcataaaaatgggctagagaaatgtgagattgaaacaacaagcagtggcacttagtagaaaattagaccaacatgc |
8991348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 110 - 298
Target Start/End: Complemental strand, 31181537 - 31181347
Alignment:
| Q |
110 |
agaactatcagtgtctaccatgctctaaaacaaaaatcacatgataagtccataaactagtaaaatctcatggaaccaatattatctaactgaattatga |
209 |
Q |
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||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| | |
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| T |
31181537 |
agaaccatcagtgtctaccatgctctaaaacaaaaaccacatgataagtccataaactagtaaaatctcattgaaccaatattatctaacagaattataa |
31181438 |
T |
|
| Q |
210 |
gtaactaatttagtggcataaaaatgggctagagaaa--tgagattgaaacaacaagcagtggcactcagtagaaaattagaccaacatgc |
298 |
Q |
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||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
31181437 |
gtaactactttagtggcatgaaaatgggctagagaaatgtgagattgaaacaacaagcagtagcacgtagtagaaaattagaccaacatgc |
31181347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 31181674 - 31181558
Alignment:
| Q |
8 |
gagatgaaattatgctattgtttttctatatggacacaacaagcactgataaacaacacataactattcaaatagagtaagctaatttgattcacacaaa |
107 |
Q |
| |
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|||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| ||||||||||||| ||| ||| |||||||||||||||||| |
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| T |
31181674 |
gagatgaaattatgctattgtttt-ctttatggacacaacaagcattgataaacaacacgtaactattcaaatggagaaagttaatttgattcacacaaa |
31181576 |
T |
|
| Q |
108 |
tgagaactatcagtgtct |
125 |
Q |
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| ||||| |||||||||| |
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| T |
31181575 |
taagaaccatcagtgtct |
31181558 |
T |
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