View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20341_low_17 (Length: 312)
Name: NF20341_low_17
Description: NF20341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20341_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 6 - 294
Target Start/End: Complemental strand, 13881822 - 13881535
Alignment:
| Q |
6 |
ctaaattatactcttatataaacttgggaaagatgatacgtaaacttgttaaacaggttaaattgttaaagccataagttcctctttttatgacattggt |
105 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13881822 |
ctaaattatacccttatataaacttgggaaagatgatacataaacttgttaaacaggttaaattgttaaagccataagttcctctttttatgacattggt |
13881723 |
T |
|
| Q |
106 |
accattcattctttctgacacttaatgcgtgtacttctatttcagcttcaagatgctgtgactgatgagatggataataagcttcctcaactatatgcat |
205 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
13881722 |
accattcattctttctgacacttaatgtatgtacttctatttcagcttcaagatgctgtgactgatgagatggatattaagcttcttcaactatatgcat |
13881623 |
T |
|
| Q |
206 |
atgaaaaatcaataaaacttgaaaagtttgtcgatatagtttaccacataaatgcttgtgttctacacgattagaacatatatcgtatt |
294 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13881622 |
atg-aaaatcaataaaacttgaaaagtttgtcgatatagtttaccacgaaaatgcttgtgttctacacgattagaacatatatcgtatt |
13881535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 46 - 294
Target Start/End: Complemental strand, 16022693 - 16022441
Alignment:
| Q |
46 |
taaacttgttaaacaggttaaattgttaaagccataag-ttcctctttttatgacattggtaccattcattctttctgacacttaatgcgtgtacttcta |
144 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||| | ||| | ||||||||||||||||| ||| | |||||| ||| |
|
|
| T |
16022693 |
taaacttgttaaacaggttaaatgcataaagccataaaattcctctttttataagcttgatgtcattcattctttctgacccttcaattatgtactccta |
16022594 |
T |
|
| Q |
145 |
tttcagcttcaagatgctgtgactgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatag |
244 |
Q |
| |
|
||||||||||||| || || || ||||||||||||||||||||| | |||||||||||||||||| ||||||| ||||| || ||||||||||||||||| |
|
|
| T |
16022593 |
tttcagcttcaagctgttgcgagtgatgagatggataataagctgcttcaactatatgcatatgagaaatcaagaaaacctggaaagtttgtcgatatag |
16022494 |
T |
|
| Q |
245 |
tttaccacataaatgcttgtg---ttctacacgattagaacatatatcgtatt |
294 |
Q |
| |
|
|||| ||| ||||||| ||| |||| || ||| ||||||||||||||||| |
|
|
| T |
16022493 |
tttatcacgaaaatgctcgtgttcttcttcatgatgagaacatatatcgtatt |
16022441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 100 - 287
Target Start/End: Original strand, 14389488 - 14389673
Alignment:
| Q |
100 |
attggtaccattcattctttctgacacttaatgcgtgtacttctatttcagcttcaagatgctgtgactgatgagatggataataagcttcctcaactat |
199 |
Q |
| |
|
|||||||||||| ||| ||||||||||| || | |||||| |||| ||||||| | || || || || || ||||||||||||||||| |||||||| |
|
|
| T |
14389488 |
attggtaccattaattttttctgacactgaaagtatgtactcttatt--agcttcacgctgttgcgagtggtgggatggataataagcttcttcaactat |
14389585 |
T |
|
| Q |
200 |
atgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatagtttaccacataaatgcttgtgttctacacgattagaacatata |
287 |
Q |
| |
|
|||||| ||| ||||||| ||| |||| ||||||||| ||||||||||| ||| |||| || ||||||| || ||| |||||||||| |
|
|
| T |
14389586 |
atgcatttgacaaatcaagaaagcttggaaagtttgttgatatagtttatcacgaaaattctcgtgttcttcatgatgagaacatata |
14389673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 48707228 - 48707308
Alignment:
| Q |
168 |
tgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatagttta |
248 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| ||||||| | ||||||| |||||||| |||| |||| ||||||||||| |
|
|
| T |
48707228 |
tgatgagatggttaataagcttcttcaactaaatgcataccagaaatcaagaaaacttggaaagcttgttgatatagttta |
48707308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 26200174 - 26200118
Alignment:
| Q |
166 |
actgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaa |
222 |
Q |
| |
|
||||||||||||||||| || |||| ||||||||||||||||||| |||||| |||| |
|
|
| T |
26200174 |
actgatgagatggataacaaacttcttcaactatatgcatatgaacaatcaagaaaa |
26200118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 29623333 - 29623277
Alignment:
| Q |
166 |
actgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaa |
222 |
Q |
| |
|
||||||||||||||||| || |||| |||||||||||||| |||| |||||| |||| |
|
|
| T |
29623333 |
actgatgagatggataacaaacttcttcaactatatgcatgtgaacaatcaagaaaa |
29623277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University