View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20341_low_19 (Length: 305)
Name: NF20341_low_19
Description: NF20341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20341_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 2 - 289
Target Start/End: Original strand, 34922936 - 34923223
Alignment:
| Q |
2 |
aaagaaatgaattaatttatgcaacatataatactatatcatattgctcaactacaaacttgaccaaaccagcagaactagtgctattacaacataaaac |
101 |
Q |
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| T |
34922936 |
aaagaaatgaattaatttatgcaacatataatactatatcatattgctcaactacaaacttgaccaaaccaacagaactagtgctattacaacataaaac |
34923035 |
T |
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| Q |
102 |
atagtcaaatttacatatcttgaatgttttgactaacacatgaatcatccacatcaatagcagctacttttgaagcactaatcttaaaggaagcagattg |
201 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34923036 |
atagtcaaatttacatatcttgaatgttttcactaacacatgaatcatccacatcaatagcagctacttttgaaacactaatcttaaaggaagcagattg |
34923135 |
T |
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| Q |
202 |
aatcttatatggtaacttagcattactaacagaaaccacacctttttcttcatctctcttcaaatcactaggaggtaaaaaacaatcc |
289 |
Q |
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| T |
34923136 |
aatcttatatggtaacttagcattactaacagaaaccacacctttttcttcatctctcttcaaatcactaggaggtaaaaaacaatcc |
34923223 |
T |
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Back To:
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 288
Target Start/End: Original strand, 31211194 - 31211228
Alignment:
| Q |
254 |
tctctcttcaaatcactaggaggtaaaaaacaatc |
288 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
31211194 |
tctctcttcaaatcactaggaggtaaaaaacaatc |
31211228 |
T |
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