View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20341_low_2 (Length: 561)
Name: NF20341_low_2
Description: NF20341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20341_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 111 - 545
Target Start/End: Complemental strand, 45627430 - 45626995
Alignment:
| Q |
111 |
tatatatagtagatagacaatgacatttatcaaacagataaggtactaatctacaatccaaacttcgtaggaccaccctaaagtagtttgtaccttgcat |
210 |
Q |
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| T |
45627430 |
tatatatagtagatagacaatgacatttatcgaacagataaggtactaatctacaatccaaacttcgtaggaccaccctaaagtagcttgtaccttgcat |
45627331 |
T |
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| Q |
211 |
ataagccctgcaccattctcaacatt-atatgatttcagatgtccctctcctccaattattccccttgattcgtggtgaactacaacatatttccataca |
309 |
Q |
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| T |
45627330 |
ataagccctgcaccattctcaacatttatatgatttcagatgtccctctcctccaattattccccttgattcgtggtgaactacaacatatttccataca |
45627231 |
T |
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| Q |
310 |
gatgcgtttctcttctatttagtacacatgtcaactaatactaaactgtaacttcagaggccatactgagccaagaacctaattcagagcattttcatcc |
409 |
Q |
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| T |
45627230 |
gatgcgtttctcttctatttagtacacatgtcaactaatactaaactgtaacttcagaggccatactgagccaagaacctaattcagagcattttcatcc |
45627131 |
T |
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| Q |
410 |
agctgacttgaaaagaagattaacattacatcccagacacgtgtatacaacaacattttcctttttattcttttatggaaacatctatacaacaacttct |
509 |
Q |
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| T |
45627130 |
agctgacttgaaaagaagattaacattacatcccagtcacgtgtatacaacaacattttcctttttattcttttatggatacatctatacaacaacttct |
45627031 |
T |
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| Q |
510 |
gcgatcaaaacttggcctccagaagaatggaggagt |
545 |
Q |
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| T |
45627030 |
gcgatcaaaacttggcctccagaagaatggaggagt |
45626995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 45627560 - 45627464
Alignment:
| Q |
13 |
gaacatcaaagataaactatggaaggcaatgaaaactactaaatttataaatttatggtacatattccattcaacaaagattacaatatataggatc |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45627560 |
gaacatcaaagataaactatggaaggcaatgaaaactactaaatttataaatttatggtacatattccattcaaccaagattacaatatataggatc |
45627464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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