View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20341_low_20 (Length: 304)
Name: NF20341_low_20
Description: NF20341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20341_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 6145796 - 6145520
Alignment:
| Q |
17 |
aattatcggttttggcgacggtttggcgctcgttggtttacaagaatatttctatgaccaagttcccgattcaatgagaagtttgggaattggactttac |
116 |
Q |
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| T |
6145796 |
aattatcggttttggcgacggtttggcgcttgttggtttacaagaatatttctatgatcaagttcctgattcaatgagaagcttgggaattggactttac |
6145697 |
T |
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| Q |
117 |
cttagtgtgattggagctgcaaattttctaagtagtttgttgataacaattgttgatcatgtgacaagtaaaagtggtaaaagttggtttggtgaagatt |
216 |
Q |
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| T |
6145696 |
cttagtgtgattggagctgcaaattttctaagtagtttgttgataacaattgttgatcatgtgacaagtaaaagtggtaaaagttggtttggtgaagatt |
6145597 |
T |
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| Q |
217 |
tgaatagtagtcgtttggataaattctattggctattggcagctataacttcattgagtgtgttagtgtctgtgctc |
293 |
Q |
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| T |
6145596 |
tgaatagtagtcgtttggataaattctattggctattggcagctataactacattgagtgtgtttgtgtttgtgctc |
6145520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 54 - 266
Target Start/End: Complemental strand, 23692582 - 23692370
Alignment:
| Q |
54 |
ttacaagaatatttctatgaccaagttcccgattcaatgagaagtttgggaattggactttaccttagtgtgattggagctgcaaattttctaagtagtt |
153 |
Q |
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| T |
23692582 |
ttacaagaatatttctatgaccaagttcctgattcaatgagaagcttaggtatagctttttatttaagtgtgattggagctgcaaattttattagtagtg |
23692483 |
T |
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| Q |
154 |
tgttgataacaattgttgatcatgtgacaagtaaaagtggtaaaagttggtttggtgaagatttgaatagtagtcgtttggataaattctattggctatt |
253 |
Q |
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| T |
23692482 |
tgttgataacaattgttgatcatataacaaagaaaaatgggaagagttggtttggtaaggatttgaatagtagtagattggacaaattttattggctatt |
23692383 |
T |
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| Q |
254 |
ggcagctataact |
266 |
Q |
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||||||||||||| |
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| T |
23692382 |
ggcagctataact |
23692370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 48 - 208
Target Start/End: Complemental strand, 31074931 - 31074771
Alignment:
| Q |
48 |
gttggtttacaagaatatttctatgaccaagttcccgattcaatgagaagtttgggaattggactttaccttagtgtgattggagctgcaaattttctaa |
147 |
Q |
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| T |
31074931 |
gttggtttacaagagtatttctatggccaagttcctgactcaatgaagagtttgggaatggcattatatcttagtgtgattggagttggaagtttcttaa |
31074832 |
T |
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| Q |
148 |
gtagtttgttgataacaattgttgatcatgtgacaagtaaaagtggtaaaagttggtttgg |
208 |
Q |
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| T |
31074831 |
gtagttttttaatcactattgtggatcaagtgacagaaaagaatggtaaaagttggattgg |
31074771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 31063521 - 31063437
Alignment:
| Q |
48 |
gttggtttacaagaatatttctatgaccaagttcccgattcaatgagaagtttgggaattggactttaccttagtgtgattggag |
132 |
Q |
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| T |
31063521 |
gttggtttacaagagtatttctacgaccaagttcctgactcaatgagaagcttaggaatggcattatatcttagtgtgattggag |
31063437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 31057439 - 31057383
Alignment:
| Q |
48 |
gttggtttacaagaatatttctatgaccaagttcccgattcaatgagaagtttggga |
104 |
Q |
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|||||| ||||||| |||||||| ||| ||||||| |||||||||||||| |||||| |
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| T |
31057439 |
gttggtatacaagagtatttctacgacgaagttcctgattcaatgagaagcttggga |
31057383 |
T |
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