View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20341_low_22 (Length: 287)
Name: NF20341_low_22
Description: NF20341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20341_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 30 - 271
Target Start/End: Complemental strand, 36485455 - 36485212
Alignment:
| Q |
30 |
caaaattaatgtactaagtatgtgacaaacac--tatcgagcattaaaatggaaccttactcaattatcgaaatccttctaagtacttaggtgtagtttc |
127 |
Q |
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| T |
36485455 |
caaaattaatgtactaagtatgtgacaaacacactatcgagcattaaaatggaaccttactcaattatcgaaatccttctaagtacttaggtgtagtatc |
36485356 |
T |
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| Q |
128 |
tactcttgaatggaaggaagaacttattcattaggttacaattgagctagatactagtattgattatcatttaattattggatgacaaaaatggatcctt |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36485355 |
tactcttgaatggaaggaagaacttattcattaggttacaattgagctagatactactattgattatcattcaattattggatgacaaaaatggatcctt |
36485256 |
T |
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| Q |
228 |
actcaaaaatcgaaatccttcttaagaaattaggggtaatttct |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36485255 |
actcaaaaatcgaaatccttcttaagaaattaggggtaatttct |
36485212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 261
Target Start/End: Complemental strand, 36493156 - 36492970
Alignment:
| Q |
73 |
aaaatggaaccttactcaattatcgaaatccttctaagtacttaggtgtagtttctactcttgaatggaaggaagaacttattcattaggttacaattga |
172 |
Q |
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| T |
36493156 |
aaaatggatccttacataattattgaactccttctaagtaattaggcgtaatttcttctcttaaatcaaaggtagaacttctt---taggtgacaattga |
36493060 |
T |
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| Q |
173 |
-gctagatactagtattgattatcatttaattattggatgacaaaaatggatccttactcaaaaatcgaaatccttcttaagaaattagg |
261 |
Q |
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| T |
36493059 |
agctagattcttgtattgactatcattccattaatggatggcaaatatgcatccctactcaaaaattgaaatcgttcttaagaaattagg |
36492970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 271
Target Start/End: Complemental strand, 24053565 - 24053478
Alignment:
| Q |
184 |
gtattgattatcatttaattattggatgacaaaaatggatccttactcaaaaatcgaaatccttcttaagaaattaggggtaatttct |
271 |
Q |
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||||||||||||||| | ||||||||| |||| |||||||||||||| ||| | ||| | ||||||||| |||||| ||||||||| |
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| T |
24053565 |
gtattgattatcattcagttattggatagcaaatatggatccttactccaaatttgaagtacttcttaagtaattagccgtaatttct |
24053478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 271
Target Start/End: Complemental strand, 36493220 - 36493101
Alignment:
| Q |
149 |
acttattcattaggttacaattga-gctagatactagtattgattatcatttaattattggatgacaaaaatggatccttactcaaaaatcgaaatcctt |
247 |
Q |
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|||| |||||||||| || ||||| || || |||||||||||||||||||| | || ||||||||||||||||||||||| || || ||| ||||| |
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| T |
36493220 |
actttttcattaggtgacgattgaagcaaggtactagtattgattatcattcattt---ggatgacaaaaatggatccttacataattattgaactcctt |
36493124 |
T |
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| Q |
248 |
cttaagaaattaggggtaatttct |
271 |
Q |
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| |||| ||||||| ||||||||| |
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| T |
36493123 |
c-taagtaattaggcgtaatttct |
36493101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 24053423 - 24053368
Alignment:
| Q |
181 |
ctagtattgattatcatttaattattggatgacaaaaatggatccttactcaaaaa |
236 |
Q |
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|||||||||||||||||| ||||||||||| | ||||| |||||||||| ||||| |
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| T |
24053423 |
ctagtattgattatcattcaattattggatagcgaaaattgatccttactaaaaaa |
24053368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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