View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20341_low_23 (Length: 261)
Name: NF20341_low_23
Description: NF20341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20341_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 34668336 - 34668091
Alignment:
| Q |
1 |
caaatcacatattttcttgtagtgtcatacacagaagtaaatgagtcgtggttcaatcctaaccaaaacacttttgtagaatcagtagtgctatttatag |
100 |
Q |
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| T |
34668336 |
caaatcacatattttcttgtagtgtcgtacacagaagtaaatgagtcgtggttcaatcctaaccaaaacacttttgtagaatcagtagtgctatttatag |
34668237 |
T |
|
| Q |
101 |
tgacaccttttctcgcgaatgcatcatgaatttctcatcacccaataaaatctccttatgtccaaaattcacttatgagtgtaagttgtgtggtcaaact |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34668236 |
tgacaccttttctcgcaaatgcatcatgaatttctcatcatccaataaaatctccttatgtccaaaattcacttatgagtgtaagttgtgtggtcaaact |
34668137 |
T |
|
| Q |
201 |
ttcaacatatagtactatctgaatcaattccgttgtagaatatatt |
246 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34668136 |
ttcaacatatagtactatctgaagcaattccgttgtagaatatatt |
34668091 |
T |
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