View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20341_low_25 (Length: 244)
Name: NF20341_low_25
Description: NF20341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20341_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 34668602 - 34668841
Alignment:
| Q |
1 |
acatattatagcgattccgtagcaaatctccagctgaaatnnnnnnnntaattataaatcaacacagcttatgctaaatgacgacttcaatagctggggt |
100 |
Q |
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| T |
34668602 |
acatattgtagcgattccgtagcaaatctccagctgaaataaaaaaaataattataaatcaacacagcttatgctaaatgacgacttcaatagctggggt |
34668701 |
T |
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| Q |
101 |
actcctttatggagtaactagacctagcaatttaaggtagtaatacaatgcaaaaccctgcagttattgattaattaagaaatttcttggtttgttagat |
200 |
Q |
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| T |
34668702 |
actcctttatggagtaactagacctagcaatttaaggtagtaatacaatgcaaaaccctgcagttattgattaattaagaaatttcttggtttgttagat |
34668801 |
T |
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| Q |
201 |
tgcatatatatcatctacggcataaaccagcagttctgtg |
240 |
Q |
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| T |
34668802 |
tgcatatatatcatctacggcataaaccagcagttctgtg |
34668841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 132 - 240
Target Start/End: Original strand, 18185884 - 18185994
Alignment:
| Q |
132 |
ttaaggtagtaatacaatgcaaa-accctgcagttattgattaattaagaaatttcttggtttgtt-agattgcatatatatcatctacggcataaacca |
229 |
Q |
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| T |
18185884 |
ttaaggtactaatacaatgcaacgacccagcagttattgattaattaagatatttattggattgtttagattgaatatatatcatctaaggcataaacca |
18185983 |
T |
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| Q |
230 |
gcagttctgtg |
240 |
Q |
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| T |
18185984 |
gcaattctgtg |
18185994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 122
Target Start/End: Original strand, 18185792 - 18185855
Alignment:
| Q |
59 |
tcaacacagcttatgctaaatgacgacttcaatagctggggtactcctttatggagtaactaga |
122 |
Q |
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| T |
18185792 |
tcaacacagcttatgctaactgatgacttcattcgctgggatactcttttatggagtaactaga |
18185855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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