View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20341_low_33 (Length: 220)
Name: NF20341_low_33
Description: NF20341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20341_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 20270522 - 20270338
Alignment:
| Q |
17 |
cagagaggtcatttaaattagttgtaaaacgcagtcgtttgagagcatcggaagctgtagattgagagagttgggatttggaaacaagacggttgatgga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20270522 |
cagagaggtcatttaaattagttgtaaaacgcagtcgtttgagagcatcggaagctgtagattgagagagttgggatttggaaacaagacggttgatgga |
20270423 |
T |
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| Q |
117 |
agaagaaatggaagaggaggcggttgaaagaacttgagggttgacatctagaaggcagacgtcgatgccatgcatggcggtcagt |
201 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20270422 |
agaagaaatggaagaggaggcagttgaaagaacttgagggttgacatctagaaggcagacgtcgatgccatgcatggcggtcagt |
20270338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 21057151 - 21056967
Alignment:
| Q |
17 |
cagagaggtcatttaaattagttgtaaaacgcagtcgtttgagagcatcggaagctgtagattgagagagttgggatttggaaacaagacggttgatgga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21057151 |
cagagaggtcatttaaattagttgtaaaacgcagtcgtttgagagcatcggaagctgtagattgagagagttgggatttggaaacaagacggttgatgga |
21057052 |
T |
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| Q |
117 |
agaagaaatggaagaggaggcggttgaaagaacttgagggttgacatctagaaggcagacgtcgatgccatgcatggcggtcagt |
201 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21057051 |
agaagaaatggaagaggaggcagttgaaagaacttgagggttgacatctagaaggcagacgtcgatgccatgcatggcggtcagt |
21056967 |
T |
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