View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20341_low_35 (Length: 216)
Name: NF20341_low_35
Description: NF20341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20341_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 36908782 - 36908582
Alignment:
| Q |
1 |
aacaccgacacatagacaccaataataatttgagcaaatgacataatcacatgtgtcagaaaccggtcacactttcgatcagaagtgttgactccaaaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36908782 |
aacaccgacacatagacaccaataataatttgagcaaatgacataatcacatgtgtcagaaaccggtcacactttcgatcagaagtgttgactccaaaga |
36908683 |
T |
|
| Q |
101 |
ttgtgcatccctaaagagtttttcctatcctcattactaatctcaaaacttctaaattaatttcaaattcaattcatcgaaatgttaagttgtgactata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36908682 |
ttgtgcatccctaaagagtttttcctatcctcattactaatctcaaaacttctaaattaatttcaaattcaattcatagaaatgttaagttgtgactata |
36908583 |
T |
|
| Q |
201 |
c |
201 |
Q |
| |
|
| |
|
|
| T |
36908582 |
c |
36908582 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36908831 - 36908783
Alignment:
| Q |
1 |
aacaccgacacatagacaccaataataatttgagcaaatgacataatca |
49 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36908831 |
aacaccgacacatagacaccaataataatttgagcaaatgacataatca |
36908783 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 41558755 - 41558710
Alignment:
| Q |
2 |
acaccgacacatagacaccaataataatttgagcaaatgacataat |
47 |
Q |
| |
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|||| ||||||| ||||| |||||||||||||| |||||||||||| |
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|
| T |
41558755 |
acactgacacattgacacaaataataatttgagaaaatgacataat |
41558710 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 34201116 - 34201073
Alignment:
| Q |
4 |
accgacacatagacaccaataataatttgagcaaatgacataat |
47 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| |||||||||||| |
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|
| T |
34201116 |
accgacacattgacactaataataatttgagaaaatgacataat |
34201073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 40063951 - 40063983
Alignment:
| Q |
15 |
gacaccaataataatttgagcaaatgacataat |
47 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
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|
| T |
40063951 |
gacaccaataataatttgagaaaatgacataat |
40063983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 4859172 - 4859139
Alignment:
| Q |
15 |
gacaccaataataatttgagcaaatgacataatc |
48 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
4859172 |
gacaccaataataatttgagaaaatgacataatc |
4859139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 7367546 - 7367579
Alignment:
| Q |
8 |
acacatagacaccaataataatttgagcaaatga |
41 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
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|
| T |
7367546 |
acacatagacaccaataataatttgagaaaatga |
7367579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 46191417 - 46191372
Alignment:
| Q |
2 |
acaccgacacatagacaccaataataatttgagcaaatgacataat |
47 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||| |||| ||||||| |
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|
| T |
46191417 |
acacggacacatcgacaccaataataatttgagaaaatcacataat |
46191372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 2525903 - 2525871
Alignment:
| Q |
15 |
gacaccaataataatttgagcaaatgacataat |
47 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
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|
| T |
2525903 |
gacaccgataataatttgagcaaatgacataat |
2525871 |
T |
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