View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20341_low_5 (Length: 488)
Name: NF20341_low_5
Description: NF20341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20341_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 13881787 - 13882261
Alignment:
| Q |
1 |
tcatctttcccaagtttatataagggtataatttagacattataattttagtagagtacaatcatactgaatgaaaggtaactgtgctaattatacacta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
13881787 |
tcatctttcccaagtttatataagggtataatttagacattataattttagtagagtacaatcatactgaatgaaaggtaactgtgctaattatacaata |
13881886 |
T |
|
| Q |
101 |
attatacaacttga-------aactacagagaaaaccaattaaggttttgaaagtcagaagggagtgaatgtctagtaagaacataaatggggtacatgc |
193 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13881887 |
attatacaacttgaaagttgaaactacagagaaaaccaattaaggttttgaaagtcagaagggagtgaatgtctagtaagaacataaatggggtacatgc |
13881986 |
T |
|
| Q |
194 |
tttgccaatggcttcacgtttagaaaatggcaatgacgttccatctccttcaacttcatgcgcatcatccattttcatcagcttcaccttcactttcagc |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13881987 |
tttgccaatggcttcacgtttagaaaatggcaatgacgttccatctccttcaacttcatgcgcattatccattttcatcagcttcaccttcactttcagc |
13882086 |
T |
|
| Q |
294 |
cttattatcatgttctgctgcttctgcatcctcgcaccatcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcctccaatg |
393 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13882087 |
cttattatcatg---------ttctgcatcctcgcaccatcaatagatttgcttccagaaacatcagcatttgcagaagtattttcgctgtcctccaatg |
13882177 |
T |
|
| Q |
394 |
acctctgaggactttcttccccttcatcatcagcatccatgtagttttctcctctggcttcaccacaaacttcttccacaggtt |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13882178 |
acctctgaggactttcttccccttcatcatcagcatccatgtagttttctcctctggcttcaccacaaacttcttccccaggtt |
13882261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 210 - 469
Target Start/End: Original strand, 16024464 - 16024735
Alignment:
| Q |
210 |
cgtttagaaaatggcaatgacgttccatctccttcaacttcatgcgcatcatccattttcatcagcttcaccttcactttcagccttattatcatgttct |
309 |
Q |
| |
|
|||| ||||||||| ||||| ||||||||||||||||| ||||| |||||| ||||| | |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16024464 |
cgttcagaaaatggtaatgatgttccatctccttcaacatcatgtgcatcagccattc-cttcagcttcaccttcactttcagccttatcatcatgttct |
16024562 |
T |
|
| Q |
310 |
gc-------tgct--tct-----gca-tcctcgcaccatcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcctccaatga |
394 |
Q |
| |
|
| |||| ||| ||| ||||| | ||||| ||||| ||||||||||||||| | ||| |||||| ||||| ||| |||| |||| |
|
|
| T |
16024563 |
ccatcatcatgctcttcttgagagcactcctctc--catcagcagattcacttccagaaacatcaacgtttccagaagcgttttcactgccctctgatga |
16024660 |
T |
|
| Q |
395 |
cctctgaggactttcttccccttcatcatcagcatccatgtagttttctcctctggcttcaccacaaacttcttc |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
16024661 |
cctctgaggactttcttccccttcatcatcagcatctgcataattttctcctctggcttcaccacaaacttcttc |
16024735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 217 - 418
Target Start/End: Original strand, 13883806 - 13884011
Alignment:
| Q |
217 |
aaaatggcaatgacgttccatctccttcaacttcatgcgcatcatccattttcatcagcttcaccttcactttcagccttattatcatgttctgctgctt |
316 |
Q |
| |
|
||||||||||| || |||||||| ||||||| |||||||||||| |||| | |||||||||||| |||||||||||||||||||||||||| || | |
|
|
| T |
13883806 |
aaaatggcaataactttccatcttcttcaacatcatgcgcatcagccatcg-cttcagcttcacctccactttcagccttattatcatgttctccttcaa |
13883904 |
T |
|
| Q |
317 |
ctgcatcctcgcac-----catcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcctccaatgacctctgaggactttctt |
411 |
Q |
| |
|
| ||| || | |||||| ||||| |||||||||||||||| |||||||||||| ||||| || |||||| |||||||||||||||| |||| |
|
|
| T |
13883905 |
catcatgttctccatcagtcatcaacagattcgcttccagaaacatcaacattttcagaagcattttaactatcctccgatgacctctgaggactctctt |
13884004 |
T |
|
| Q |
412 |
ccccttc |
418 |
Q |
| |
|
||||||| |
|
|
| T |
13884005 |
ccccttc |
13884011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 328 - 470
Target Start/End: Complemental strand, 14397598 - 14397456
Alignment:
| Q |
328 |
caccatcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcctccaatgacctctgaggactttcttccccttcatcatcagc |
427 |
Q |
| |
|
|||||| | |||||| ||||| |||||| || ||||||||||| |||||| |||||||| ||||||| ||||||||||||||||||||||||| | |
|
|
| T |
14397598 |
caccattagtagattcacttcctgaaacaacaacattttcagaaccattttcattgtcctccgatgacctatgaggactttcttccccttcatcattaag |
14397499 |
T |
|
| Q |
428 |
atccatgtagttttctcctctggcttcaccacaaacttcttcc |
470 |
Q |
| |
|
|||||| || |||||| ||| |||||||||||||||||||| |
|
|
| T |
14397498 |
atccatataattttcttctcctccttcaccacaaacttcttcc |
14397456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 470
Target Start/End: Complemental strand, 14391312 - 14391173
Alignment:
| Q |
328 |
caccatcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcctccaatgacctctgaggactttct-tccccttcatcatcag |
426 |
Q |
| |
|
|||||||| |||||| | |||||||||||| | |||||| |||| ||||| ||||||| ||||||| |||||||||||| |||||||||||| |
|
|
| T |
14391312 |
caccatcattagattcgattccagaaacataaacatttttagaacctttttcattgtcctcggatgacctatgaggactttctacccccttcatcat--- |
14391216 |
T |
|
| Q |
427 |
catccatgtagttttctcctctggcttcaccacaaacttcttcc |
470 |
Q |
| |
|
||||| || |||||| ||||||||| |||||||| ||||||| |
|
|
| T |
14391215 |
-ttccatataattttcttctctggctttaccacaaatttcttcc |
14391173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 309
Target Start/End: Complemental strand, 14393221 - 14393132
Alignment:
| Q |
215 |
agaaaatggcaatgacgttccatctccttcaacttcatgcgcatcatccattttcatcagcttcaccttcactttcagccttattatcatgttct |
309 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| | | |||| | |||| | | ||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
14393221 |
agaaaatggcaatgacattccatctccttcaac---aggggcattagccatcat--ttagcttcaccttcactttcagccttactatcacgttct |
14393132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 427
Target Start/End: Complemental strand, 14393043 - 14393011
Alignment:
| Q |
395 |
cctctgaggactttcttccccttcatcatcagc |
427 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
14393043 |
cctccgaggactttcttccccttcatcatcagc |
14393011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University