View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20341_low_6 (Length: 486)

Name: NF20341_low_6
Description: NF20341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20341_low_6
NF20341_low_6
[»] chr1 (14 HSPs)
chr1 (1-468)||(34910492-34910959)
chr1 (2-139)||(28542936-28543072)
chr1 (298-401)||(28542668-28542771)
chr1 (177-296)||(28542797-28542925)
chr1 (118-231)||(34905400-34905519)
chr1 (8-74)||(34905307-34905373)
chr1 (118-206)||(34896848-34896937)
chr1 (6-74)||(34896753-34896821)
chr1 (298-359)||(34897513-34897574)
chr1 (397-448)||(28542585-28542636)
chr1 (399-449)||(28544101-28544151)
chr1 (399-449)||(28544332-28544382)
chr1 (399-441)||(28544571-28544613)
chr1 (345-394)||(34897515-34897564)


Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Original strand, 34910492 - 34910959
Alignment:
Q  1 acattaattcacatgaaatcttcattaaagaagaaagaaaatacaataatagtaaattcagagtaagcaaagctagaccagttggtttgcaaatccttcg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34910492 acattaattcacatgaaatcttcattaaagaagaaagaaaatacaataatagtacattcagagtaagcaaagctagaccagttggtttgcaaatccttcg 34910591  T
Q  101 taaaaacaaaatcttcctaaaagcattagctaagcactacaaagaatctatgtgtatgaaaactcgtatttcactttaaaatattgtgcttctcacacat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34910592 taaaaacaaaatcttcctaaaagcattagctaagcactacaaataatctatgtgtatgaaaactcgtatttcactttaaaatattgtgcttctcacacat 34910691  T
Q  201 cacatggtgctaccaataaactggtttcaaagaagacaatttactaagagcaagaaaattaataaaatggaaaaatatcaaaatttccaatagaaagatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34910692 cacatggtgctaccaataaactggtttcaaagaagacaatttactaagagcaagaaaattaataaaatggaaaaatatcaaaatttccaatagaaagatt 34910791  T
Q  301 acccaaaaccggagttgaagatggcccaaatgcaggcattgaactaccaaaagcaggagttgaagatgctccatatgcaggcattgaactaccaccgaaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34910792 acccaaaaccggagttgaagatggcccaaatgcaggcattgaactaccaaaagcaggagttgaagatgctccatatgcaggcattgaactaccaccgaaa 34910891  T
Q  401 gagaagcgagacggcgtttgagctgcaccaaatacacctgtggaagtactccctgacgtggaattaac 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34910892 gagaagcgagacggcgtttgagctgcaccaaatacacctgtggaagtactccctgacgtagaattaac 34910959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 28543072 - 28542936
Alignment:
Q  2 cattaattcacatgaaatcttcattaaagaagaaagaaaatacaataatagtaaattcagagtaagcaaagctagaccagttggtttgcaaatccttcgt 101  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||| || || ||||||||||||||| |    
T  28543072 cattaattcacatgaaaacttcattaaagaagaaataaaatacaataatagtaaattcaaagtaaccaaagctaga-caatttgtttgcaaatccttcat 28542974  T
Q  102 aaaaacaaaatcttcctaaaagcattagctaagcacta 139  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  28542973 aaaaacaaaatcttcctaaaagcattagctaagtacta 28542936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 298 - 401
Target Start/End: Complemental strand, 28542771 - 28542668
Alignment:
Q  298 attacccaaaaccggagttgaagatggcccaaatgcaggcattgaactaccaaaagcaggagttgaagatgctccatatgcaggcattgaactaccaccg 397  Q
    |||||||||||||||||||||||||| ||  ||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||    
T  28542771 attacccaaaaccggagttgaagatgccctgaatgcaggcgttgaactaccaaaagcaggagttgaagatgcgccaaatgcaggcaatgaactaccaccg 28542672  T
Q  398 aaag 401  Q
    ||||    
T  28542671 aaag 28542668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 177 - 296
Target Start/End: Complemental strand, 28542925 - 28542797
Alignment:
Q  177 taaaatattgtgcttctcacacatcacatggtgctaccaataaactggtttcaaag---------aagacaatttactaagagcaagaaaattaataaaa 267  Q
    |||| |||||||||||||||| ||||| |||  |||||||||||||||||||||||         |||||| ||| | |||||||||| |||||||||||    
T  28542925 taaactattgtgcttctcacaaatcacctggcactaccaataaactggtttcaaaggcttccatgaagacagtttgccaagagcaagacaattaataaaa 28542826  T
Q  268 tggaaaaatatcaaaatttccaatagaaa 296  Q
    ||| |||||||||||||||||||||||||    
T  28542825 tgggaaaatatcaaaatttccaatagaaa 28542797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 118 - 231
Target Start/End: Original strand, 34905400 - 34905519
Alignment:
Q  118 taaaagcattagctaagcactacaaagaatctatgtgtatgaaaactcgtatttcactt---taaaatattgtgcttctcacacatcacatggtgctacc 214  Q
    |||||| ||| |||||||||||||||  ||| |||||||||||||||  ||||||||||   ||||||||||||||||||||||||||||||   |||||    
T  34905400 taaaagaattggctaagcactacaaaatatccatgtgtatgaaaactgttatttcacttctttaaaatattgtgcttctcacacatcacatgacactacc 34905499  T
Q  215 ---aataaactggtttcaaa 231  Q
       |||||||||||||||||    
T  34905500 aataataaactggtttcaaa 34905519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 34905307 - 34905373
Alignment:
Q  8 ttcacatgaaatcttcattaaagaagaaagaaaatacaataatagtaaattcagagtaagcaaagct 74  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| | |||||||||    
T  34905307 ttcacatgaaatcttcattagagaagaaagaaaatacaataataataaattcagatttagcaaagct 34905373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 34896848 - 34896937
Alignment:
Q  118 taaaagcattagctaagcactacaaagaatctatgtgtatgaaaactcgtatttcactt-taaaatattgtgcttctcacacatcacatg 206  Q
    |||||||||| |||||||||||||||  ||| |||||||||||||||  |||||| ||| |  |||||||||||||||||||||||||||    
T  34896848 taaaagcattggctaagcactacaaaatatccatgtgtatgaaaactgttatttcgcttctttaatattgtgcttctcacacatcacatg 34896937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 34896753 - 34896821
Alignment:
Q  6 aattcacatgaaatcttcattaaagaagaaagaaaatacaataatagtaaattcagagtaagcaaagct 74  Q
    |||||||||||||||||||||| | |||||||||||||  |||||| |||||||||| | |||||||||    
T  34896753 aattcacatgaaatcttcattagaaaagaaagaaaatatgataataataaattcagatttagcaaagct 34896821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 298 - 359
Target Start/End: Original strand, 34897513 - 34897574
Alignment:
Q  298 attacccaaaaccggagttgaagatggcccaaatgcaggcattgaactaccaaaagcaggag 359  Q
    |||||| ||| ||||||||||||||| ||||||||| ||||||||| |||||||||| ||||    
T  34897513 attaccaaaagccggagttgaagatgccccaaatgccggcattgaagtaccaaaagctggag 34897574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 397 - 448
Target Start/End: Complemental strand, 28542636 - 28542585
Alignment:
Q  397 gaaagagaagcgagacggcgtttgagctgcaccaaatacacctgtggaagta 448  Q
    |||||||||| ||||||| ||||||||||  |||||||||||||||||||||    
T  28542636 gaaagagaagagagacggtgtttgagctgtgccaaatacacctgtggaagta 28542585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 449
Target Start/End: Complemental strand, 28544151 - 28544101
Alignment:
Q  399 aagagaagcgagacggcgtttgagctgcaccaaatacacctgtggaagtac 449  Q
    |||||||| ||||||| ||||||||| | ||||||||||||||||||||||    
T  28544151 aagagaagggagacggtgtttgagcttcgccaaatacacctgtggaagtac 28544101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 449
Target Start/End: Complemental strand, 28544382 - 28544332
Alignment:
Q  399 aagagaagcgagacggcgtttgagctgcaccaaatacacctgtggaagtac 449  Q
    |||||||| ||||||| ||||||||| | ||||||||||||||||||||||    
T  28544382 aagagaagggagacggtgtttgagcttcgccaaatacacctgtggaagtac 28544332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 441
Target Start/End: Complemental strand, 28544613 - 28544571
Alignment:
Q  399 aagagaagcgagacggcgtttgagctgcaccaaatacacctgt 441  Q
    |||||||| ||||||| ||||||||||| ||||||||||||||    
T  28544613 aagagaagggagacggtgtttgagctgcgccaaatacacctgt 28544571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 394
Target Start/End: Original strand, 34897515 - 34897564
Alignment:
Q  345 taccaaaagcaggagttgaagatgctccatatgcaggcattgaactacca 394  Q
    |||||||||| |||||||||||||| ||| |||| ||||||||| |||||    
T  34897515 taccaaaagccggagttgaagatgccccaaatgccggcattgaagtacca 34897564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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