View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20341_low_7 (Length: 460)
Name: NF20341_low_7
Description: NF20341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20341_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 10 - 451
Target Start/End: Original strand, 5913961 - 5914402
Alignment:
| Q |
10 |
atcactactcacttttgatttttaccactttaatgtaatgcaaaattttgtgtaagaatacataccttgttcccatagaggtaaagccaaattgcaagac |
109 |
Q |
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| T |
5913961 |
atcactactcacttttgatttttaccattttaatgtaatgcaaaattttgtgtaagaatacataccttgttcccatagaggtaaagccaaattgcaagac |
5914060 |
T |
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| Q |
110 |
ccaacaggcaaagaaattttctgttccaacttctttacatcaacttcataaaaccaccaatcaccttcatgtttaaccaaatcatcacatctaaaaatct |
209 |
Q |
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| T |
5914061 |
ccaacaggcaaagaaattttctgctccaacttctttacatcaacttcataaaaccaccaatcaccttcatgtttaaccaaatcatcacatctaaaaatct |
5914160 |
T |
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| Q |
210 |
ctaacattggtctacatttactccaaaacacaaccttactcttccatttccaatccttttttcctttcttcacaaccatatttgcaactataagatgaac |
309 |
Q |
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| T |
5914161 |
ctaacattggtctacatttactccaaaacacaaccttactcttccatttccaatccttttttcctttcttcacaaccatatttgcaactataagatgaac |
5914260 |
T |
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| Q |
310 |
ttgtaaccttaaaacttctctcccccacccttctaatggatacttgcatggtaactttgcaactattatgtccatgttttcatatgttgcgaattcgggc |
409 |
Q |
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| T |
5914261 |
ttgtaaccttaaaacttctctcccccacccttctaatggatacttgcatggtaactttgcaactattatgtccatgttttcatatgttgcgaattcgggc |
5914360 |
T |
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| Q |
410 |
attggtaactcgggacatgttggaacatcgctttcttcttct |
451 |
Q |
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| T |
5914361 |
attggtaactcgggacatgttggaacatcgctttcttcttct |
5914402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 69 - 451
Target Start/End: Original strand, 5909523 - 5909905
Alignment:
| Q |
69 |
acataccttgttcccatagaggtaaagccaaattgcaagacccaacaggcaaagaaattttctgttccaacttctttacatcaacttcataaaaccacca |
168 |
Q |
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|||||||||||||||||| ||| ||||| ||||| || ||||||||||||||||||| |||||||||||| ||||||||||||| ||| |||||||||| |
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| T |
5909523 |
acataccttgttcccatataggcaaagctaaattacatgacccaacaggcaaagaaactttctgttccaatctctttacatcaacctcaaaaaaccacca |
5909622 |
T |
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| Q |
169 |
atcaccttcatgtttaaccaaatcatcacatctaaaaatctctaacattggtctacatttactccaaaacacaaccttactcttccatttccaatccttt |
268 |
Q |
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| T |
5909623 |
atcaccttcatgattaaccaagtcatcacatctaaaaatctccaacattggtctacatttactccaaaaaataactctactcttccgtttccaatctttc |
5909722 |
T |
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| Q |
269 |
tttcctttcttcacaaccatatttgcaactataagatgaacttgtaaccttaaaacttctctcccccacccttctaatggatacttgcatggtaactttg |
368 |
Q |
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|| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || |||| |||||| ||||||||||||||||||||||| |
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| T |
5909723 |
ttccctttcttcacaaccatatttgctaccataagatgaacttgtaaccttaaaacttccctagcccatccttcttctggatacttgcatggtaactttg |
5909822 |
T |
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| Q |
369 |
caactattatgtccatgttttcatatgttgcgaattcgggcattggtaactcgggacatgttggaacatcgctttcttcttct |
451 |
Q |
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|||||||||||||||||||||| |||||||| ||||| ||||||||||| || |||||||||||||| ||||||||||||||| |
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| T |
5909823 |
caactattatgtccatgttttcgtatgttgcaaattctggcattggtaattcaggacatgttggaacttcgctttcttcttct |
5909905 |
T |
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