View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20341_low_9 (Length: 451)
Name: NF20341_low_9
Description: NF20341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20341_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 28629623 - 28629178
Alignment:
| Q |
1 |
acatcaactaatctaaagtgcaaccctagtaatttgatagcaggtgcctctgataagcaaacttttatgtgcaaagctgctccaaaatcaacatatatac |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28629623 |
acatgaactaatctaaagtgcaaccctagtaatttgatagcaggtgcctctgataagaaaacttttatgtgcaaagctgctccaaaatcaacatatttac |
28629524 |
T |
|
| Q |
101 |
aaacaataaaagtttggtgttggtatctaagttacttacagcttcatgagcataatcaacatcattcctaggataggaaatgtttgttttggcatcaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28629523 |
aaacaataaaagtttggtgttggtatctaagttacttacagcttcatgagcataatcagcatcattcctaggataggaaatgtttgttttggcatcaatg |
28629424 |
T |
|
| Q |
201 |
tttgatggaagacgaaactcatgcatcatccaatcagttttggtgccttttccggcactaccgcgatagtaaacaagtgnnnnnnngagtccaacacaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28629423 |
tttgatggaagacgaaactcatgcatcatccaatcagttttggtgccttttccggcactaccgcgatagtaaacaagtgtttttttgagtccaacacaat |
28629324 |
T |
|
| Q |
301 |
catttccttctgctccatttgagtaaattggtttgtctattccagttgctttccaaaatccagagccagtcactctatttggcctaacgctgttcctata |
400 |
Q |
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||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28629323 |
catttccttctgctccatttgagtatattgctttgtctattccagttgctttccagaatccagagccagtcactctatttggtctaacgctgttcctata |
28629224 |
T |
|
| Q |
401 |
ttttcttcctctttggcaaaaatagtaaccttccttctctgctcct |
446 |
Q |
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| T |
28629223 |
ttttcttcctctttggcaaaaaaagtaaccttccttctctgctcct |
28629178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 128 - 445
Target Start/End: Complemental strand, 28614971 - 28614654
Alignment:
| Q |
128 |
taagttacttacagcttcatgagcataatcaacatcattcctaggataggaaatgtttgttttggcatcaatgtttgatggaagacgaaactcatgcatc |
227 |
Q |
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||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28614971 |
taagttacttacagcttcatgagcataatcagcaacattcttaggataggaaatgtttgttttggcatcaatgtttgatggaagacgaaactcatgcatc |
28614872 |
T |
|
| Q |
228 |
atccaatcagttttggtgccttttccggcactaccgcgatagtaaacaagtgnnnnnnngagtccaacacaatcatttccttctgctccatttgagtaaa |
327 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28614871 |
atccaatcagttttggtgccttttccggcactaccacgatagtaaacaagtgtttttttgagtccaacacaatcatttccttctgctccatttgagtaaa |
28614772 |
T |
|
| Q |
328 |
ttggtttgtctattccagttgctttccaaaatccagagccagtcactctatttggcctaacgctgttcctatattttcttcctctttggcaaaaatagta |
427 |
Q |
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||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28614771 |
ttgctttgtctattccagttgctttccagaatccagagccagtcactctatttggcctaacgctgttcctatattttcttcctctttggcaaaaaaagta |
28614672 |
T |
|
| Q |
428 |
accttccttctctgctcc |
445 |
Q |
| |
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||||||||| |||||||| |
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| T |
28614671 |
accttccttttctgctcc |
28614654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 251
Target Start/End: Complemental strand, 33728043 - 33728000
Alignment:
| Q |
208 |
gaagacgaaactcatgcatcatccaatcagttttggtgcctttt |
251 |
Q |
| |
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|||||||| |||||||||| ||||||| |||||||||||||||| |
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| T |
33728043 |
gaagacgatactcatgcataatccaattagttttggtgcctttt |
33728000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 385
Target Start/End: Complemental strand, 33727930 - 33727878
Alignment:
| Q |
333 |
ttgtctattccagttgctttccaaaatccagagccagtcactctatttggcct |
385 |
Q |
| |
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|||||| ||||||||||||||||| | ||||| |||| |||||||||||||| |
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| T |
33727930 |
ttgtctgttccagttgctttccaatacccagatccagctactctatttggcct |
33727878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 348 - 413
Target Start/End: Complemental strand, 39633562 - 39633497
Alignment:
| Q |
348 |
gctttccaaaatccagagccagtcactctatttggcctaacgctgttcctatattttcttcctctt |
413 |
Q |
| |
|
||||||||||||||||| || ||||||||||| ||||| | ||||||||||||||||||||||||| |
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| T |
39633562 |
gctttccaaaatccagatcctgtcactctattaggccttatgctgttcctatattttcttcctctt |
39633497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 39633697 - 39633648
Alignment:
| Q |
210 |
agacgaaactcatgcatcatccaatcagttttggtgccttttccggcact |
259 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||| || ||||| |
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| T |
39633697 |
agacgaaattcatgcatcatccaatcagttttggtgcctttccctgcact |
39633648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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