View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20342_high_1 (Length: 204)
Name: NF20342_high_1
Description: NF20342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20342_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 32281994 - 32281819
Alignment:
| Q |
13 |
gaagaagaagataatagtaaaggtagaggagaagttgaaagagagaatattgattttaatgtgctatcagccttggtaatacacagctgcacactatatt |
112 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32281994 |
gaagaagaagataatagtaaaggtagagttgaagttgaaagagagaatattgattttaatgtgctatcagccttggtaatacacagtcgcacactatatt |
32281895 |
T |
|
| Q |
113 |
cagttgaagatatagagaataggctgcatgggaatttgattaatggaaagtaggtttaacattaattatatggaag |
188 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32281894 |
cagttgaagatgtagagaataggctgcatgggaatttgattaatggaaagtaggtttaacattaattctatggaag |
32281819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 15701229 - 15701054
Alignment:
| Q |
13 |
gaagaagaagataatagtaaaggtagaggagaagttgaaagagagaatattgattttaatgtgctatcagccttggtaatacacagctgcacactatatt |
112 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
15701229 |
gaagaagaagataatagtaaaggtagagttgaagttgaaagagagaatattgattttaatgtgctatcagccttggtaatacacagtcgcacactatatt |
15701130 |
T |
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| Q |
113 |
cagttgaagatatagagaataggctgcatgggaatttgattaatggaaagtaggtttaacattaattatatggaag |
188 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
15701129 |
cagttgaagatgtagagaataggctgcatgggaatttgattaatggaaagtaggtttaacattaattctatggaag |
15701054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 12512670 - 12512601
Alignment:
| Q |
13 |
gaagaagaagataatagtaaaggtagaggagaagttgaaagagagaatattgattttaatgtgctatcag |
82 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12512670 |
gaagaagaagataatagtaaaggtagaggagaagttgaaagagagaatattgattttaatgtgctatcag |
12512601 |
T |
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