View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20342_high_13 (Length: 302)
Name: NF20342_high_13
Description: NF20342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20342_high_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 29 - 280
Target Start/End: Complemental strand, 32264906 - 32264654
Alignment:
| Q |
29 |
agtaagttggttaaacgaaaaa-taaagatgaatctatgtatatatgatcagaaacattttaaattagataaaatagcttatattggtcatcaacacatg |
127 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32264906 |
agtaagttggttaaacgaaaaaataaagatgaatctatgtatatatgatcagaaacattttaaattagataaaatagcttatattggtcatcaacacatg |
32264807 |
T |
|
| Q |
128 |
agatcagtaagagagacacaaacaaacaaaggaggtgaaatattgaagcatacctcatggttcgccagtagatttgaacttacacgttctttcttttccc |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
32264806 |
agatcagtaagagagacacaaacaaacaaaggaggtgaaatattgaagcatacctcatggttcgccaatagatttgaacttccacgttctttcttttccc |
32264707 |
T |
|
| Q |
228 |
ttcttactggagataaatcactatcatcgtcaatttccatttcaaatgatgat |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32264706 |
ttcttactggagataaatcactatcatcgtcaatttccatttcaaatgatgat |
32264654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University