View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20342_high_3 (Length: 371)
Name: NF20342_high_3
Description: NF20342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20342_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 20 - 346
Target Start/End: Complemental strand, 4761652 - 4761328
Alignment:
| Q |
20 |
atcaaatgtttcttgtacctcaattcaattttaataggactgaaaagaaccattgtgttatgaatgatgttgtcttgtcttgtggtaacgatttcaattg |
119 |
Q |
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| T |
4761652 |
atcaaatgtttcttgtacctcaatttaattttaataggactgaaaagaaccattgtgttatgaatgatgttgtcttgtcttgtggtaacgatttcaattg |
4761553 |
T |
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| Q |
120 |
cgtgtatgaatatgtccttttcatagaacaattgggtataaacgcaaccttaattataatgtaattattaattattatggtttaccaacaaaccccgcct |
219 |
Q |
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| T |
4761552 |
cgtgtatgaat--gtccttttcattgaacaattgggtataaacgcaaccttaattataatgtaattattaattattatggtttaccaataaaccctgcct |
4761455 |
T |
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| Q |
220 |
attgatattttctgttacgtaaatggtgagattaacatattgtaacaaacattaacaaaaattgttaacaaatctatgcatggtaagatataataagaaa |
319 |
Q |
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| T |
4761454 |
attgatattttctgttacgtaaatggtgagattaacatattgtaacaaacattaacaaaaattgttaacaaatctatgcatggtaagatataataagaaa |
4761355 |
T |
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| Q |
320 |
aatggttctggttccacttagtcatga |
346 |
Q |
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|||| |||||||||||||||||||||| |
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| T |
4761354 |
aatgattctggttccacttagtcatga |
4761328 |
T |
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