View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20342_high_4 (Length: 348)
Name: NF20342_high_4
Description: NF20342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20342_high_4 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 10 - 348
Target Start/End: Original strand, 15473380 - 15473717
Alignment:
| Q |
10 |
catagggtcaaatggtatccaaattctaacattttatgtggttggtaaatttcaatttcgctacaaatgttattgaagaattctaccatgtctaacaaga |
109 |
Q |
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| T |
15473380 |
catagggtcaaatggtatccaaattctaacattttat-tggttggtaaatttcaatttcgctacaaatgttattgaagaattctaccatgtctaacaaga |
15473478 |
T |
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| Q |
110 |
ttcaaagggacaaatagatcatacaattacataaccaaattcactataattcatggatgaaaatgactactctaataactactcaaatcatttcccttca |
209 |
Q |
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| T |
15473479 |
ttcaaagggacaaatagatcatacaattacataaccaaattcactataattcatggatgaaaatgactactctaataactactcaaatcatttcccttca |
15473578 |
T |
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| Q |
210 |
tatttgtgtttgtcaaataatccacaaactggttaatattcttatcagagctacctccttcacaaacagcatccctagccaacttcttccattcactagc |
309 |
Q |
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| T |
15473579 |
tatttgtgtttgtcaaataatccacaaactggttaatattcttatcagagctacctccttcacaaacagcatccctagccaacttcttccattcactagc |
15473678 |
T |
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| Q |
310 |
attccttctaatcacttcacttctttcactttccatcac |
348 |
Q |
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| T |
15473679 |
attccttctaatcacttcacttctttcactttccatcac |
15473717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 15 - 348
Target Start/End: Original strand, 15465214 - 15465574
Alignment:
| Q |
15 |
ggtcaaatggtatccaaattctaacattttatgtggttggtaa------atttcaatttcgctacaaatgttattgaagaattctaccatgtctaacaag |
108 |
Q |
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| T |
15465214 |
ggtcaaatggtttccaaattctaacattttatgtggttggcaatgtcacatttcagtttcgctacaaatattattgaagaattttaccatgtctaagatg |
15465313 |
T |
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| Q |
109 |
attcaaagggacaaatag-atcatacaattacataa--------------------ccaaattcactataattcatggatgaaaatgactactctaataa |
187 |
Q |
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| T |
15465314 |
attcaaaggaacaaataacatcatacaaccacataaatctttataattcaatctaaccaaattcactattattcatggaagaaaatgaccactctagtaa |
15465413 |
T |
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| Q |
188 |
ctactcaaatcatttcccttcatatttgtgtttgtcaaataatccacaaactggttaatattcttatcagagctacctccttcacaaacagcatccctag |
287 |
Q |
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| T |
15465414 |
ccactcaaatcatttccttttttatttgtgttcatcaaatgatccacaaactcgtcaatatttttattagagctacctcgttcagaaacagcatccctag |
15465513 |
T |
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| Q |
288 |
ccaacttcttccattcactagcattccttctaatcacttcacttctttcactttccatcac |
348 |
Q |
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| T |
15465514 |
ccaacttcttccattcactagcattccttctaatcacttcacttctttcactttccatcac |
15465574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 145 - 348
Target Start/End: Original strand, 15460169 - 15460373
Alignment:
| Q |
145 |
caaattcactataattcatggatgaaaa-tgactactctaataactactcaaatcatttcccttcatatttgtgtttgtcaaataatccacaaactggtt |
243 |
Q |
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|||||||||||| |||||||||| |||| |||| |||||| |||| ||||||||||||||||||| |||||||||| |||||| ||||||||||| || |
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| T |
15460169 |
caaattcactattattcatggataaaaaatgaccactctagtaaccactcaaatcatttcccttcttatttgtgttcatcaaatgatccacaaactcgtc |
15460268 |
T |
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| Q |
244 |
aatattcttatcagagctacctccttcacaaacagcatccctagccaacttcttccattcactagcattccttctaatcacttcacttctttcactttcc |
343 |
Q |
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| T |
15460269 |
aatattcttataaaaactatctgtttcacaaacaacatccctaaccaacttctttcattcactagaattccttctaatcacttcacttctttcaccttcc |
15460368 |
T |
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| Q |
344 |
atcac |
348 |
Q |
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||||| |
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| T |
15460369 |
atcac |
15460373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 10 - 348
Target Start/End: Original strand, 15463440 - 15463808
Alignment:
| Q |
10 |
catagggtcaaatggtatccaaattctaacattttatgtggttggtaaatt-----tcaatttcgctacaaatgttattgaagaattctaccatgtctaa |
104 |
Q |
| |
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|||| ||||| ||||| |||||||||||||||||||||||||||| || | ||| |||| |||||||| ||||||||||||| |||||||||||| |
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| T |
15463440 |
cataaggtcacatggtttccaaattctaacattttatgtggttggcaatgtcacattcagtttcactacaaatattattgaagaattttaccatgtctaa |
15463539 |
T |
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| Q |
105 |
caagattcaaagggacaaa--tagatcatacaattacataa--------------------ccaaattcactataattcatggatgaaaatgactactct |
182 |
Q |
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| T |
15463540 |
catgattcaaaggaaaaaaattacatcatacaatcacataaatcttcataattcaatctaacaaaattcactattattcatggatgaaaattaccactct |
15463639 |
T |
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| Q |
183 |
aataactactcaaatcatttcccttcatatttgtgtttgtcaaataatccacaaactggttaatattcttatcagagctacctccttcacaaacagcatc |
282 |
Q |
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| |||| ||||| |||||||||||| |||| | ||| |||||| |||||||| || || ||||||||||||||| |||||||||||| ||||| |||| |
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| T |
15463640 |
agtaaccactcatttcatttcccttcttattagggttcatcaaatgatccacaatctcgtcaatattcttatcagaactacctccttcagaaacaacatc |
15463739 |
T |
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| Q |
283 |
cctagccaacttcttcc---attcactagcattccttctaatcacttcacttctttcactttccatcac |
348 |
Q |
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| T |
15463740 |
cctagccaacttctttcaatattcactagtattccttctaatcacttcacttctttcaccttccatcac |
15463808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 15 - 258
Target Start/End: Original strand, 15427102 - 15427372
Alignment:
| Q |
15 |
ggtcaaatggtatccaaattctaacattttatgtggttggtaa------atttcaatttcgctacaaatgttattgaagaattctaccatgtctaacaag |
108 |
Q |
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||||||||||| ||||||||| |||| |||||| ||||| || |||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
15427102 |
ggtcaaatggtttccaaattcaaacaatttatggagttggcaatgtctcatttcaatttcgctacaaatattattgaacaattctaccatgtctaacaag |
15427201 |
T |
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| Q |
109 |
attcaaagggacaaatag-atcatacaattacataa--------------------ccaaattcactataattcatggatgaaaatgactactctaataa |
187 |
Q |
| |
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|||| |||||||||||| |||| | |||||||||| ||||||| ||||| ||||||||||||||||||| ||||||| || |
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| T |
15427202 |
attcgaagggacaaataacatcaaaaaattacataaatcttcataattcaatctaaccaaatttactattattcatggatgaaaatgaccactctaa-aa |
15427300 |
T |
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| Q |
188 |
ctactcaaatcatttccc-ttcatatttgtgtttgtcaaataatccacaaactggttaatattcttatcaga |
258 |
Q |
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| T |
15427301 |
cccctcaaatcatttccctttcttatttgtgttcatcaaatgatccacaaactcgtgaatattcttatcaga |
15427372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 244 - 331
Target Start/End: Original strand, 15460635 - 15460722
Alignment:
| Q |
244 |
aatattcttatcagagctacctccttcacaaacagcatccctagccaacttcttccattcactagcattccttctaatcacttcactt |
331 |
Q |
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| T |
15460635 |
aatattcttatcaaaactacctctttcagaaacaacatccctagccaacttcttccattcactagcattatttcttatcacttcactt |
15460722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 109
Target Start/End: Original strand, 15460023 - 15460120
Alignment:
| Q |
10 |
catagggtcaaatggtatccaaattctaacattttatgtggttggtaaatttcaatttcgctacaaatgttattgaagaattctaccatgtctaacaaga |
109 |
Q |
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|||| ||||||||||| |||||||||||| |||| ||| ||||| |||||||||||| |||||||| | |||||||| ||||||||||||||||||||| |
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| T |
15460023 |
cataaggtcaaatggtttccaaattctaatatttaatg--gttggcaaatttcaattttgctacaaaagatattgaagtattctaccatgtctaacaaga |
15460120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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