View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20342_high_6 (Length: 347)
Name: NF20342_high_6
Description: NF20342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20342_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 174 - 337
Target Start/End: Complemental strand, 3464595 - 3464432
Alignment:
| Q |
174 |
cgctgtggatcgaactcatatacactgttggcgtaatgannnnnnngtcaataaatagtaatcgtttgaccattcatgtctatttctaaatgacacataa |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3464595 |
cgctgtggatcgaactcatatacactgttggcgtaatgatttttttgtcaataaatcgtaatcgtttgaccattcatgtctatttctaaatgacacataa |
3464496 |
T |
|
| Q |
274 |
ttggttgggatttgttgacagtgtaaattttttatatgtatcaatttgccttgtcggttctgtg |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
3464495 |
ttggttgggatttgttgacagtgtaaattttttatatgtatcaattttccttgtcggttttgtg |
3464432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 3464768 - 3464650
Alignment:
| Q |
1 |
agataaacttttattgcatccaaaaacattggatagtgttactaatgattcaatgcctttagtatgttttggaggcaagaatgttgtcgaaggtacgcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3464768 |
agataaacttttattgcatccaaaaacattggatagtgttactaatgattcaatgcctttagtatgttttggaggcaagaatgttgtcgaaggtacgcat |
3464669 |
T |
|
| Q |
101 |
cagttctatatgcatatgc |
119 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
3464668 |
cagttctatatgcatatgc |
3464650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University